Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS16650

Experiment: Xanthosine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xanthosine (C)
3,774,259	+		PFLU_RS16640	0.87	-1.7
3,774,260	-		PFLU_RS16640	0.87	-1.0
3,774,260	-		PFLU_RS16640	0.87	+6.4
3,774,437	-				-0.4
3,774,484	-				-0.4
3,774,484	-				+1.2
3,774,509	+				+1.4
3,774,509	+				+0.0
3,774,509	+				-1.0
3,774,510	-				-0.4
3,774,510	-				-3.1
3,774,528	-				+1.2
3,774,541	+				+2.2
3,774,541	+				-0.4
3,774,541	+				+2.6
3,774,541	+				+0.0
3,774,542	-				-1.1
3,774,542	-				+2.0
3,774,542	-				+4.0
3,774,542	-				+4.4
3,774,542	-				+2.2
3,774,584	+				+0.0
3,774,585	-				-0.2
3,774,585	-				+1.8
3,774,585	-				+0.3
3,774,585	-				-0.7
3,774,651	+		PFLU_RS16645	0.15	-1.4
3,774,651	+		PFLU_RS16645	0.15	+0.0
3,774,651	+		PFLU_RS16645	0.15	-1.7
3,774,651	+		PFLU_RS16645	0.15	-1.0
3,774,651	+		PFLU_RS16645	0.15	-1.0
3,774,651	+		PFLU_RS16645	0.15	-1.5
3,774,652	-		PFLU_RS16645	0.16	-1.0
3,774,652	-		PFLU_RS16645	0.16	-3.1
3,774,652	-		PFLU_RS16645	0.16	-1.0
3,774,652	-		PFLU_RS16645	0.16	+1.6
3,774,761	+		PFLU_RS16645	0.38	+0.3
3,774,761	+		PFLU_RS16645	0.38	+2.2
3,774,761	+		PFLU_RS16645	0.38	+0.3
3,774,761	+		PFLU_RS16645	0.38	+2.9
3,774,761	+		PFLU_RS16645	0.38	-0.0
3,774,761	+		PFLU_RS16645	0.38	-2.3
3,774,761	+		PFLU_RS16645	0.38	+2.9
3,774,761	+		PFLU_RS16645	0.38	+0.8
3,774,761	+		PFLU_RS16645	0.38	-2.0
3,774,762	-		PFLU_RS16645	0.39	+0.0
3,774,762	-		PFLU_RS16645	0.39	-1.0
3,774,762	-		PFLU_RS16645	0.39	-1.0
3,774,762	-		PFLU_RS16645	0.39	+3.3
3,774,762	-		PFLU_RS16645	0.39	-1.5
3,774,839	+		PFLU_RS16645	0.55	+1.6
3,774,839	+		PFLU_RS16645	0.55	-1.0
3,774,839	+		PFLU_RS16645	0.55	-1.4
3,774,840	-		PFLU_RS16645	0.55	+1.6
3,774,840	-		PFLU_RS16645	0.55	+2.2
3,774,840	-		PFLU_RS16645	0.55	-1.0
3,774,840	-		PFLU_RS16645	0.55	+3.4
3,774,840	-		PFLU_RS16645	0.55	+0.8
3,774,840	-		PFLU_RS16645	0.55	+0.6
3,774,840	-		PFLU_RS16645	0.55	+2.0
3,774,844	+		PFLU_RS16645	0.56	-1.4
3,774,845	-		PFLU_RS16645	0.56	+1.0
3,774,845	-		PFLU_RS16645	0.56	+2.5
3,774,925	+		PFLU_RS16645	0.73	-0.4
3,774,925	+		PFLU_RS16645	0.73	+0.0
3,774,928	+		PFLU_RS16645	0.73	-1.4
3,774,929	-		PFLU_RS16645	0.74	-1.4
3,774,929	-		PFLU_RS16645	0.74	-1.0
3,774,929	-		PFLU_RS16645	0.74	-1.5
3,774,968	+		PFLU_RS16645	0.82	+1.6
3,774,969	-		PFLU_RS16645	0.82	+0.6
3,774,969	-		PFLU_RS16645	0.82	+0.0
3,775,016	+				-0.5
3,775,016	+				-1.4
3,775,016	+				+0.6
3,775,016	+				-0.3
3,775,016	+				-2.0
3,775,016	+				-2.1
3,775,016	+				+0.5
3,775,016	+				+5.7
3,775,016	+				+0.6
3,775,016	+				-0.4
3,775,016	+				+0.8
3,775,016	+				+2.0
3,775,017	-				-2.5
3,775,017	-				+3.8
3,775,017	-				-1.2
3,775,017	-				+1.0
3,775,017	-				+0.8
3,775,017	-				-0.7
3,775,017	-				+0.0
3,775,017	-				+2.9
3,775,017	-				-2.4
3,775,017	-				+0.6
3,775,017	-				-2.1
3,775,017	-				-1.0
3,775,019	+				+1.6
3,775,019	+				-1.7
3,775,019	+				+0.5
3,775,019	+				+0.8
3,775,020	-				-2.0
3,775,020	-				-0.7
3,775,020	-				-1.8
3,775,020	-				-0.4
3,775,020	-				-1.8
3,775,020	-				-1.4
3,775,020	-				+0.6
3,775,020	-				+0.6
3,775,020	-				-1.0
3,775,020	-				+0.0
3,775,020	-				+1.6
3,775,098	+				-0.4
3,775,098	+				+1.6
3,775,098	+				-2.3
3,775,098	+				-0.4
3,775,098	+				-1.0
3,775,098	+				-0.4
3,775,098	+				+1.1
3,775,098	+				+0.0
3,775,098	+				+1.6
3,775,099	-				-3.1
3,775,099	-				-1.2
3,775,099	-				-0.6
3,775,099	-				-2.2
3,775,099	-				-1.5
3,775,099	-				+3.8
3,775,099	-				+0.8
3,775,099	-				+1.6
3,775,099	-				+0.3
3,775,099	-				+3.7
3,775,099	-				+4.1
3,775,099	-				-1.7
3,775,099	-				-0.4
3,775,099	-				-1.4
3,775,099	-				-1.5
3,775,099	-				+0.9
3,775,192	+				-2.1
3,775,198	+				+2.1
3,775,198	+				-1.2
3,775,198	+				-0.7
3,775,198	+				-2.2
3,775,198	+				+0.7
3,775,198	+				+2.7
3,775,198	+				-0.3
3,775,198	+				-2.7
3,775,199	-				+2.1
3,775,199	-				-2.1
3,775,199	-				-0.7
3,775,199	-				+0.6
3,775,199	-				+1.6
3,775,199	-				+1.6
3,775,199	-				-2.0
3,775,199	-				-0.7
3,775,199	-				-1.4
3,775,220	-				-0.5
3,775,341	+				+1.3
3,775,341	+				+2.6
3,775,383	+		PFLU_RS16650	0.11	+2.9
3,775,384	-		PFLU_RS16650	0.11	+2.5
3,775,487	-		PFLU_RS16650	0.19	+1.6
3,775,487	-		PFLU_RS16650	0.19	+2.3
3,775,487	-		PFLU_RS16650	0.19	+1.6
3,775,532	-		PFLU_RS16650	0.23	+0.0
3,775,569	+		PFLU_RS16650	0.26	-1.2
3,775,569	+		PFLU_RS16650	0.26	+2.4
3,775,575	+		PFLU_RS16650	0.26	+2.2
3,775,576	-		PFLU_RS16650	0.26	+1.4
3,775,639	-		PFLU_RS16650	0.31	-0.4
3,775,677	+		PFLU_RS16650	0.34	-1.4
3,775,678	-		PFLU_RS16650	0.34	-0.7
3,775,678	-		PFLU_RS16650	0.34	+0.6
3,775,686	-		PFLU_RS16650	0.35	-0.4
3,775,686	-		PFLU_RS16650	0.35	-0.2
3,775,707	+		PFLU_RS16650	0.36	+0.8
3,775,707	+		PFLU_RS16650	0.36	+0.5
3,775,707	+		PFLU_RS16650	0.36	-1.2
3,775,707	+		PFLU_RS16650	0.36	+1.4
3,775,707	+		PFLU_RS16650	0.36	-1.4
3,775,708	-		PFLU_RS16650	0.37	-1.4
3,775,708	-		PFLU_RS16650	0.37	+0.6
3,775,708	-		PFLU_RS16650	0.37	+0.0
3,775,708	-		PFLU_RS16650	0.37	-1.7
3,775,711	-		PFLU_RS16650	0.37	+1.6
3,775,736	+		PFLU_RS16650	0.39	+0.6
3,775,736	+		PFLU_RS16650	0.39	-2.8
3,775,736	+		PFLU_RS16650	0.39	-3.0
3,775,736	+		PFLU_RS16650	0.39	+0.2
3,775,737	-		PFLU_RS16650	0.39	-1.0
3,775,737	-		PFLU_RS16650	0.39	+0.6
3,775,815	+		PFLU_RS16650	0.45	+0.2
3,775,815	+		PFLU_RS16650	0.45	+2.2
3,775,815	+		PFLU_RS16650	0.45	-0.9
3,775,816	-		PFLU_RS16650	0.45	+0.6
3,775,816	-		PFLU_RS16650	0.45	-2.0
3,775,836	+		PFLU_RS16650	0.47	+0.0
3,775,836	+		PFLU_RS16650	0.47	-1.4
3,775,907	+		PFLU_RS16650	0.52	+0.0
3,775,907	+		PFLU_RS16650	0.52	+3.0
3,775,907	+		PFLU_RS16650	0.52	+4.6
3,775,908	-		PFLU_RS16650	0.52	+1.2
3,775,908	-		PFLU_RS16650	0.52	-0.4
3,775,908	-		PFLU_RS16650	0.52	+3.6
3,775,974	+		PFLU_RS16650	0.57	+1.5
3,775,975	-		PFLU_RS16650	0.57	+3.5
3,775,975	-		PFLU_RS16650	0.57	+0.0
3,775,975	-		PFLU_RS16650	0.57	+0.8
3,775,975	-		PFLU_RS16650	0.57	-0.7
3,776,046	+		PFLU_RS16650	0.63	-2.0
3,776,046	+		PFLU_RS16650	0.63	-1.0
3,776,046	+		PFLU_RS16650	0.63	+0.8
3,776,046	+		PFLU_RS16650	0.63	+1.2
3,776,047	-		PFLU_RS16650	0.63	+0.0
3,776,047	-		PFLU_RS16650	0.63	+0.8
3,776,047	-		PFLU_RS16650	0.63	+1.7
3,776,047	-		PFLU_RS16650	0.63	+1.5
3,776,056	+		PFLU_RS16650	0.64	+2.4
3,776,101	+		PFLU_RS16650	0.67	-1.0
3,776,101	+		PFLU_RS16650	0.67	-0.9
3,776,137	-		PFLU_RS16650	0.70	-0.3
3,776,182	+		PFLU_RS16650	0.74	-2.8
3,776,211	+		PFLU_RS16650	0.76	-1.4
3,776,212	-		PFLU_RS16650	0.76	-0.4
3,776,212	-		PFLU_RS16650	0.76	+0.1
3,776,249	+		PFLU_RS16650	0.79	+6.0
3,776,249	+		PFLU_RS16650	0.79	-1.5
3,776,262	-		PFLU_RS16650	0.80	-0.7
3,776,287	+		PFLU_RS16650	0.82	+1.9
3,776,288	-		PFLU_RS16650	0.82	+2.0
3,776,288	-		PFLU_RS16650	0.82	-1.4
3,776,300	+		PFLU_RS16650	0.83	-2.0
3,776,300	+		PFLU_RS16650	0.83	+0.1
3,776,362	-		PFLU_RS16650	0.88	+1.6
3,776,473	+				+0.6
3,776,474	-				+0.6
3,776,506	-				+3.1
3,776,509	+				-3.0
3,776,509	+				+0.5
3,776,509	+				+2.1
3,776,509	+				-0.4
3,776,510	-				-1.2
3,776,510	-				-1.4
3,776,574	+				-1.2
3,776,574	+				-0.4
3,776,575	-				-0.4
3,776,628	-				+0.0
3,776,630	-				-0.4
3,776,668	-		PFLU_RS16655	0.13	-1.2
3,776,709	-		PFLU_RS16655	0.18	+0.0
3,776,759	+		PFLU_RS16655	0.24	-2.0
3,776,760	-		PFLU_RS16655	0.24	+1.6
3,776,782	+		PFLU_RS16655	0.27	-1.5
3,776,803	-		PFLU_RS16655	0.29	+0.0
3,776,839	-		PFLU_RS16655	0.33	-0.7
3,776,843	+		PFLU_RS16655	0.34	+3.4
3,777,011	-		PFLU_RS16655	0.54	-0.5
3,777,011	-		PFLU_RS16655	0.54	-0.4
3,777,011	-		PFLU_RS16655	0.54	-0.4
3,777,055	+		PFLU_RS16655	0.59	-0.7
3,777,064	-		PFLU_RS16655	0.60	-0.7
3,777,134	+		PFLU_RS16655	0.69	-1.0
3,777,139	+		PFLU_RS16655	0.69	-2.2
3,777,192	+		PFLU_RS16655	0.76	+0.5
3,777,193	-		PFLU_RS16655	0.76	-2.1
3,777,197	-		PFLU_RS16655	0.76	-1.8
3,777,241	-		PFLU_RS16655	0.82	-1.2
3,777,286	-		PFLU_RS16655	0.87	-2.0
3,777,290	+		PFLU_RS16655	0.88	+0.0
3,777,366	+				+0.6