Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS16375

Experiment: Xanthosine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xanthosine (C)
3,712,324	-				+1.5
3,712,341	+				+0.6
3,712,341	+				-1.5
3,712,404	+		PFLU_RS16370	0.17	-0.4
3,712,404	+		PFLU_RS16370	0.17	+0.6
3,712,404	+		PFLU_RS16370	0.17	-2.9
3,712,405	-		PFLU_RS16370	0.17	-2.9
3,712,405	-		PFLU_RS16370	0.17	+1.6
3,712,405	-		PFLU_RS16370	0.17	-1.8
3,712,405	-		PFLU_RS16370	0.17	+0.5
3,712,405	-		PFLU_RS16370	0.17	+2.1
3,712,405	-		PFLU_RS16370	0.17	+1.9
3,712,448	-		PFLU_RS16370	0.21	-0.9
3,712,495	+		PFLU_RS16370	0.26	-0.7
3,712,496	-		PFLU_RS16370	0.26	-1.9
3,712,603	+		PFLU_RS16370	0.38	+0.6
3,712,603	+		PFLU_RS16370	0.38	-1.9
3,712,603	+		PFLU_RS16370	0.38	+1.1
3,712,603	+		PFLU_RS16370	0.38	+0.4
3,712,604	-		PFLU_RS16370	0.38	-2.8
3,712,604	-		PFLU_RS16370	0.38	+2.7
3,712,604	-		PFLU_RS16370	0.38	-0.9
3,712,604	-		PFLU_RS16370	0.38	-2.1
3,712,604	-		PFLU_RS16370	0.38	-0.9
3,712,667	-		PFLU_RS16370	0.45	+2.9
3,712,667	-		PFLU_RS16370	0.45	+0.1
3,712,981	+		PFLU_RS16370	0.79	+0.4
3,712,981	+		PFLU_RS16370	0.79	+1.0
3,712,982	-		PFLU_RS16370	0.79	-1.8
3,712,982	-		PFLU_RS16370	0.79	-0.8
3,712,982	-		PFLU_RS16370	0.79	+1.8
3,712,984	+		PFLU_RS16370	0.79	-1.7
3,712,984	+		PFLU_RS16370	0.79	-1.4
3,712,985	-		PFLU_RS16370	0.79	-0.9
3,712,985	-		PFLU_RS16370	0.79	-1.4
3,712,985	-		PFLU_RS16370	0.79	+0.9
3,713,210	-				+2.2
3,713,222	-				-1.2
3,713,374	+				-0.9
3,713,374	+				-2.3
3,713,375	-				+2.1
3,713,375	-				-0.4
3,713,464	+		PFLU_RS16375	0.17	-0.4
3,713,464	+		PFLU_RS16375	0.17	-1.4
3,713,464	+		PFLU_RS16375	0.17	-2.2
3,713,464	+		PFLU_RS16375	0.17	-1.2
3,713,465	-		PFLU_RS16375	0.17	+1.5
3,713,465	-		PFLU_RS16375	0.17	+1.2
3,713,603	-		PFLU_RS16375	0.31	-0.9
3,713,603	-		PFLU_RS16375	0.31	-1.9
3,713,603	-		PFLU_RS16375	0.31	+2.1
3,713,662	+		PFLU_RS16375	0.37	-2.7
3,713,662	+		PFLU_RS16375	0.37	+0.7
3,713,662	+		PFLU_RS16375	0.37	+3.2
3,713,662	+		PFLU_RS16375	0.37	-1.4
3,713,662	+		PFLU_RS16375	0.37	-0.7
3,713,662	+		PFLU_RS16375	0.37	+4.1
3,713,662	+		PFLU_RS16375	0.37	+2.1
3,713,662	+		PFLU_RS16375	0.37	+0.6
3,713,663	-		PFLU_RS16375	0.37	+3.1
3,713,663	-		PFLU_RS16375	0.37	-1.4
3,713,665	+		PFLU_RS16375	0.37	-1.8
3,713,665	+		PFLU_RS16375	0.37	-0.2
3,713,666	-		PFLU_RS16375	0.37	+2.2
3,713,749	+		PFLU_RS16375	0.45	+2.1
3,713,908	+		PFLU_RS16375	0.61	+1.7
3,713,909	-		PFLU_RS16375	0.62	+0.9
3,713,977	+		PFLU_RS16375	0.68	-0.9
3,713,978	-		PFLU_RS16375	0.68	-0.4
3,714,044	+		PFLU_RS16375	0.75	+1.1
3,714,044	+		PFLU_RS16375	0.75	+1.5
3,714,044	+		PFLU_RS16375	0.75	-1.7
3,714,044	+		PFLU_RS16375	0.75	+0.3
3,714,044	+		PFLU_RS16375	0.75	+1.3
3,714,044	+		PFLU_RS16375	0.75	+0.1
3,714,044	+		PFLU_RS16375	0.75	+2.5
3,714,044	+		PFLU_RS16375	0.75	-0.5
3,714,045	-		PFLU_RS16375	0.75	+0.1
3,714,045	-		PFLU_RS16375	0.75	-2.1
3,714,045	-		PFLU_RS16375	0.75	+0.2
3,714,154	+		PFLU_RS16375	0.86	-0.5
3,714,154	+		PFLU_RS16375	0.86	+0.3
3,714,154	+		PFLU_RS16375	0.86	-0.7
3,714,155	-		PFLU_RS16375	0.86	+0.9
3,714,155	-		PFLU_RS16375	0.86	+0.1
3,714,155	-		PFLU_RS16375	0.86	+0.9
3,714,285	+				-0.9
3,714,293	+				-0.7
3,714,325	-				-1.5
3,714,325	-				-1.7
3,714,461	+				-2.1
3,714,461	+				+3.4
3,714,461	+				+0.3
3,714,461	+				-0.4
3,714,461	+				-0.9
3,714,461	+				-2.2
3,714,505	+				-2.1
3,714,505	+				+2.6
3,714,506	-				-1.8
3,714,506	-				-0.4
3,714,506	-				+1.1
3,714,509	+				-0.8
3,714,510	-				-1.2
3,714,510	-				+2.2
3,714,539	+				+3.0
3,714,539	+				+0.1
3,714,549	+				+2.1
3,714,550	-				+0.8
3,714,550	-				+1.2
3,714,569	+				-0.9
3,714,569	+				-1.9
3,714,570	-				+0.8
3,714,581	-				+2.5
3,714,581	-				+0.6
3,714,610	+				+0.6
3,714,623	+				+1.9
3,714,623	+				+1.6
3,714,623	+				-0.6
3,714,624	-				-0.1
3,714,624	-				-1.2
3,714,625	+				+0.7
3,714,625	+				-0.7
3,714,625	+				-1.6
3,714,626	-				+2.6
3,714,626	-				+1.0
3,714,626	-				-1.8
3,714,626	-				+0.2
3,714,657	+				-1.7
3,714,657	+				-0.1
3,714,658	-				+1.6
3,714,658	-				+3.9
3,714,658	-				-1.9
3,714,658	-				-0.9
3,714,658	-				-0.9
3,714,872	+		PFLU_RS16380	0.14	+1.5
3,714,872	+		PFLU_RS16380	0.14	+0.2
3,714,938	-		PFLU_RS16380	0.17	+3.2
3,714,938	-		PFLU_RS16380	0.17	-1.4
3,714,991	+		PFLU_RS16380	0.20	+0.6
3,714,991	+		PFLU_RS16380	0.20	-1.7
3,714,991	+		PFLU_RS16380	0.20	-0.7
3,714,991	+		PFLU_RS16380	0.20	-1.4
3,714,991	+		PFLU_RS16380	0.20	+0.1
3,714,991	+		PFLU_RS16380	0.20	+1.6
3,714,991	+		PFLU_RS16380	0.20	+0.3
3,714,991	+		PFLU_RS16380	0.20	-0.7
3,714,991	+		PFLU_RS16380	0.20	+0.6
3,714,991	+		PFLU_RS16380	0.20	-2.3
3,714,991	+		PFLU_RS16380	0.20	+1.0
3,714,992	-		PFLU_RS16380	0.20	+1.6
3,714,992	-		PFLU_RS16380	0.20	-2.4
3,714,992	-		PFLU_RS16380	0.20	-0.3
3,714,992	-		PFLU_RS16380	0.20	-1.8
3,714,992	-		PFLU_RS16380	0.20	-1.1
3,714,992	-		PFLU_RS16380	0.20	+3.6
3,714,992	-		PFLU_RS16380	0.20	-2.4
3,715,022	+		PFLU_RS16380	0.22	-1.2
3,715,022	+		PFLU_RS16380	0.22	+1.1
3,715,022	+		PFLU_RS16380	0.22	+1.6
3,715,022	+		PFLU_RS16380	0.22	+1.6
3,715,022	+		PFLU_RS16380	0.22	-1.4
3,715,022	+		PFLU_RS16380	0.22	-1.7
3,715,022	+		PFLU_RS16380	0.22	-0.4
3,715,023	-		PFLU_RS16380	0.22	-0.3
3,715,023	-		PFLU_RS16380	0.22	+0.8
3,715,023	-		PFLU_RS16380	0.22	+1.1
3,715,023	-		PFLU_RS16380	0.22	+1.9
3,715,023	-		PFLU_RS16380	0.22	-1.9
3,715,023	-		PFLU_RS16380	0.22	-0.7
3,715,023	-		PFLU_RS16380	0.22	+1.2
3,715,023	-		PFLU_RS16380	0.22	-1.7
3,715,023	-		PFLU_RS16380	0.22	-1.8
3,715,025	+		PFLU_RS16380	0.22	-0.4
3,715,025	+		PFLU_RS16380	0.22	+1.7
3,715,026	-		PFLU_RS16380	0.22	+0.1
3,715,040	+		PFLU_RS16380	0.22	+0.6
3,715,040	+		PFLU_RS16380	0.22	+1.1
3,715,041	-		PFLU_RS16380	0.22	-1.7
3,715,041	-		PFLU_RS16380	0.22	-1.4
3,715,091	+		PFLU_RS16380	0.25	+0.6
3,715,091	+		PFLU_RS16380	0.25	-2.2
3,715,091	+		PFLU_RS16380	0.25	+0.1
3,715,092	-		PFLU_RS16380	0.25	-1.5
3,715,160	+		PFLU_RS16380	0.28	-1.8
3,715,161	-		PFLU_RS16380	0.28	+0.3
3,715,161	-		PFLU_RS16380	0.28	+3.2