Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS26090

Experiment: L-Carnitine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Carnitine (C)
5,826,922	-		PFLU_RS26085	0.48	+1.4
5,826,945	+		PFLU_RS26085	0.50	+1.1
5,826,986	+		PFLU_RS26085	0.52	-1.2
5,826,986	+		PFLU_RS26085	0.52	-0.3
5,826,986	+		PFLU_RS26085	0.52	-0.2
5,826,986	+		PFLU_RS26085	0.52	-2.3
5,826,986	+		PFLU_RS26085	0.52	+1.8
5,826,987	-		PFLU_RS26085	0.53	-0.6
5,826,987	-		PFLU_RS26085	0.53	-0.2
5,826,998	+		PFLU_RS26085	0.53	-0.6
5,826,998	+		PFLU_RS26085	0.53	+0.6
5,826,999	-		PFLU_RS26085	0.53	+2.9
5,826,999	-		PFLU_RS26085	0.53	+0.6
5,827,000	+		PFLU_RS26085	0.53	-1.4
5,827,001	-		PFLU_RS26085	0.53	-0.5
5,827,001	-		PFLU_RS26085	0.53	+1.4
5,827,037	+		PFLU_RS26085	0.56	+3.0
5,827,037	+		PFLU_RS26085	0.56	-1.4
5,827,037	+		PFLU_RS26085	0.56	+1.2
5,827,037	+		PFLU_RS26085	0.56	+2.2
5,827,037	+		PFLU_RS26085	0.56	+2.2
5,827,038	-		PFLU_RS26085	0.56	-0.9
5,827,076	-		PFLU_RS26085	0.58	-1.4
5,827,076	-		PFLU_RS26085	0.58	+2.4
5,827,127	+		PFLU_RS26085	0.62	+0.8
5,827,127	+		PFLU_RS26085	0.62	+0.4
5,827,127	+		PFLU_RS26085	0.62	-1.6
5,827,128	-		PFLU_RS26085	0.62	-2.4
5,827,213	+		PFLU_RS26085	0.67	-2.6
5,827,213	+		PFLU_RS26085	0.67	-0.9
5,827,259	+		PFLU_RS26085	0.70	+1.3
5,827,260	-		PFLU_RS26085	0.70	-2.9
5,827,280	-		PFLU_RS26085	0.72	-0.4
5,827,311	+		PFLU_RS26085	0.74	+2.2
5,827,312	-		PFLU_RS26085	0.74	-0.2
5,827,416	-		PFLU_RS26085	0.81	-0.4
5,827,416	-		PFLU_RS26085	0.81	+3.8
5,827,416	-		PFLU_RS26085	0.81	+3.8
5,827,416	-		PFLU_RS26085	0.81	+2.5
5,827,424	-		PFLU_RS26085	0.81	+1.6
5,827,424	-		PFLU_RS26085	0.81	+1.5
5,827,600	+				-0.0
5,827,600	+				+0.1
5,827,600	+				+1.2
5,827,600	+				+0.9
5,827,600	+				-0.9
5,827,600	+				+3.7
5,827,600	+				-1.8
5,827,600	+				+0.7
5,827,600	+				+2.7
5,827,600	+				-1.0
5,827,600	+				+0.1
5,827,601	-				+0.8
5,827,601	-				-2.5
5,827,601	-				-1.4
5,827,601	-				-1.2
5,827,601	-				-2.2
5,827,619	+				-0.6
5,827,619	+				-1.0
5,827,619	+				-2.0
5,827,620	-				+1.4
5,827,625	+				+0.6
5,827,625	+				+3.7
5,827,625	+				-0.8
5,827,625	+				+1.0
5,827,625	+				+1.4
5,827,625	+				+1.9
5,827,625	+				+2.2
5,827,626	-				-2.0
5,827,626	-				-1.0
5,827,626	-				+3.5
5,827,626	-				+2.4
5,827,626	-				+0.7
5,827,626	-				-0.4
5,827,626	-				+2.0
5,827,626	-				+1.6
5,827,626	-				-0.1
5,827,626	-				+0.4
5,827,626	-				+0.9
5,827,626	-				-2.0
5,827,626	-				-0.9
5,827,626	-				-0.9
5,827,686	+				-2.2
5,827,687	-				+2.3
5,827,693	+				+1.0
5,827,693	+				+3.2
5,827,693	+				-0.1
5,827,693	+				+0.8
5,827,693	+				-1.9
5,827,693	+				+1.1
5,827,693	+				-0.5
5,827,693	+				+0.2
5,827,693	+				-1.8
5,827,693	+				+2.9
5,827,693	+				+3.7
5,827,693	+				-1.4
5,827,693	+				-1.9
5,827,693	+				-0.3
5,827,693	+				-2.4
5,827,693	+				-0.2
5,827,693	+				+3.9
5,827,693	+				-1.1
5,827,693	+				-0.3
5,827,693	+				-1.6
5,827,693	+				-0.9
5,827,693	+				-0.6
5,827,693	+				+2.4
5,827,693	+				+0.2
5,827,693	+				-0.8
5,827,693	+				+1.5
5,827,693	+				+1.2
5,827,693	+				-1.7
5,827,694	-				+1.0
5,827,694	-				+0.8
5,827,694	-				-2.4
5,827,694	-				-3.3
5,827,694	-				-0.5
5,827,694	-				-1.9
5,827,694	-				-0.4
5,827,694	-				-0.2
5,827,694	-				+0.9
5,827,694	-				-0.1
5,827,694	-				+0.2
5,827,694	-				+1.4
5,827,694	-				+2.8
5,827,694	-				+2.5
5,827,694	-				-2.0
5,827,694	-				+2.4
5,827,694	-				-3.5
5,827,694	-				-0.8
5,827,694	-				-0.9
5,827,694	-				-1.7
5,827,694	-				+2.3
5,827,694	-				+0.6
5,827,694	-				-1.5
5,827,694	-				-0.9
5,827,709	+				+2.1
5,827,709	+				+0.2
5,827,709	+				-0.1
5,827,709	+				-0.4
5,827,709	+				-0.5
5,827,709	+				-1.0
5,827,709	+				+2.5
5,827,709	+				-0.9
5,827,709	+				+1.8
5,827,709	+				+0.8
5,827,709	+				+0.4
5,827,709	+				+0.7
5,827,710	-				+2.7
5,827,710	-				-0.9
5,827,710	-				-2.7
5,827,710	-				-1.0
5,827,710	-				-1.8
5,827,714	-				-0.3
5,827,714	-				-0.1
5,827,720	-				-0.6
5,827,720	-				+3.1
5,827,720	-				-1.5
5,827,720	-				-0.5
5,828,906	+		PFLU_RS26090	0.52	-0.3
5,828,906	+		PFLU_RS26090	0.52	+0.9
5,828,906	+		PFLU_RS26090	0.52	-0.4
5,828,906	+		PFLU_RS26090	0.52	+2.3
5,828,906	+		PFLU_RS26090	0.52	-0.9
5,828,906	+		PFLU_RS26090	0.52	+1.3
5,828,906	+		PFLU_RS26090	0.52	-1.7
5,830,046	+				-1.2
5,830,046	+				-0.9
5,830,046	+				-1.4
5,830,046	+				-1.0
5,830,046	+				+0.5
5,830,046	+				-0.0
5,830,070	+				+0.5
5,830,070	+				+1.0
5,830,079	+				-2.3
5,830,080	-				+3.6
5,830,080	-				-1.4
5,830,080	-				+1.4
5,830,105	+				+0.2
5,830,105	+				+0.2
5,830,105	+				-1.4
5,830,106	-				-2.6
5,830,106	-				-0.1
5,830,106	-				-2.4
5,830,118	+				+3.7
5,830,119	-				-1.2
5,830,168	+				-0.4
5,830,169	-				-0.8
5,830,169	-				+1.6
5,830,210	+				+0.6
5,830,266	+		PFLU_RS26095	0.26	-0.3
5,830,266	+		PFLU_RS26095	0.26	+2.2
5,830,267	-		PFLU_RS26095	0.27	-2.6
5,830,267	-		PFLU_RS26095	0.27	+0.4
5,830,267	-		PFLU_RS26095	0.27	+1.3
5,830,324	+		PFLU_RS26095	0.49	+4.6
5,830,341	+		PFLU_RS26095	0.56	-0.1
5,830,341	+		PFLU_RS26095	0.56	+2.2
5,830,343	+		PFLU_RS26095	0.56	-0.3
5,830,343	+		PFLU_RS26095	0.56	+2.8
5,830,343	+		PFLU_RS26095	0.56	+1.6
5,830,344	-		PFLU_RS26095	0.57	-1.2
5,830,363	+		PFLU_RS26095	0.64	-0.4
5,830,363	+		PFLU_RS26095	0.64	+0.8
5,830,364	-		PFLU_RS26095	0.65	-1.9
5,830,364	-		PFLU_RS26095	0.65	-1.1
5,830,365	+		PFLU_RS26095	0.65	+0.6
5,830,365	+		PFLU_RS26095	0.65	-0.1
5,830,365	+		PFLU_RS26095	0.65	-1.4
5,830,365	+		PFLU_RS26095	0.65	+1.1
5,830,365	+		PFLU_RS26095	0.65	-0.2
5,830,365	+		PFLU_RS26095	0.65	+1.6
5,830,365	+		PFLU_RS26095	0.65	+2.1
5,830,365	+		PFLU_RS26095	0.65	+2.2
5,830,365	+		PFLU_RS26095	0.65	-1.9
5,830,366	-		PFLU_RS26095	0.65	+2.2
5,830,366	-		PFLU_RS26095	0.65	+1.0
5,830,366	-		PFLU_RS26095	0.65	-2.8
5,830,366	-		PFLU_RS26095	0.65	-1.5
5,830,366	-		PFLU_RS26095	0.65	-0.9
5,830,366	-		PFLU_RS26095	0.65	-1.7
5,830,366	-		PFLU_RS26095	0.65	+1.4
5,830,366	-		PFLU_RS26095	0.65	-1.9
5,830,366	-		PFLU_RS26095	0.65	+0.8
5,830,408	-		PFLU_RS26095	0.82	-1.5
5,830,408	-		PFLU_RS26095	0.82	-0.1
5,830,430	+				-0.8
5,830,430	+				+1.5
5,830,431	-				-1.1
5,830,431	-				+1.8
5,830,433	-				-2.5
5,830,433	-				+3.6
5,830,474	+				-1.2
5,830,474	+				-1.2
5,830,475	-				-0.2
5,830,573	+				-2.2
5,830,591	+				+0.2
5,830,591	+				-1.7
5,830,591	+				-2.3
5,830,591	+				+1.2
5,830,591	+				+2.0
5,830,591	+				-0.6
5,830,638	+				-0.7
5,830,638	+				+3.2
5,830,638	+				+1.1
5,830,639	-				-0.1
5,830,654	+				+2.3
5,830,654	+				-1.2
5,830,654	+				-0.9
5,830,654	+				+0.9
5,830,654	+				+1.2
5,830,655	-				+1.3
5,830,655	-				-0.8
5,830,655	-				+0.9
5,830,658	+				-0.6
5,830,678	+				+3.3
5,830,714	+				-2.2
5,830,733	-				-0.9
5,830,769	+				+1.2
5,830,776	+				-1.2
5,830,776	+				-1.9
5,830,777	-				+1.1
5,830,780	+				-0.4
5,830,780	+				-0.9
5,830,780	+				-0.7
5,830,821	+				+0.2