Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS15665

Experiment: L-Carnitine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Carnitine (C)
3,518,679	+		PFLU_RS15655	0.79	+0.0
3,518,686	+		PFLU_RS15655	0.79	-1.2
3,518,846	+		PFLU_RS15655	0.89	-1.2
3,518,847	-		PFLU_RS15655	0.89	-2.1
3,518,847	-		PFLU_RS15655	0.89	+5.2
3,518,847	-		PFLU_RS15655	0.89	+0.4
3,518,847	-		PFLU_RS15655	0.89	-0.2
3,518,915	+				-2.4
3,519,102	+		PFLU_RS15660	0.11	+4.4
3,519,102	+		PFLU_RS15660	0.11	-2.1
3,519,102	+		PFLU_RS15660	0.11	-1.4
3,519,102	+		PFLU_RS15660	0.11	-0.6
3,519,166	+		PFLU_RS15660	0.22	+0.4
3,519,167	-		PFLU_RS15660	0.22	-0.2
3,519,220	+		PFLU_RS15660	0.31	-0.6
3,519,220	+		PFLU_RS15660	0.31	-0.6
3,519,309	+		PFLU_RS15660	0.47	-1.8
3,519,309	+		PFLU_RS15660	0.47	-0.2
3,519,309	+		PFLU_RS15660	0.47	-0.0
3,519,309	+		PFLU_RS15660	0.47	-0.2
3,519,309	+		PFLU_RS15660	0.47	-1.9
3,519,310	-		PFLU_RS15660	0.47	-1.8
3,519,310	-		PFLU_RS15660	0.47	-2.2
3,519,310	-		PFLU_RS15660	0.47	+2.9
3,519,310	-		PFLU_RS15660	0.47	-1.8
3,519,408	-		PFLU_RS15660	0.64	+0.8
3,519,412	+		PFLU_RS15660	0.65	+0.1
3,519,413	-		PFLU_RS15660	0.65	-1.6
3,519,413	-		PFLU_RS15660	0.65	-0.2
3,519,413	-		PFLU_RS15660	0.65	-1.1
3,519,486	+		PFLU_RS15660	0.77	+1.9
3,519,516	-		PFLU_RS15660	0.83	-0.9
3,519,561	+				-0.7
3,519,562	-				+0.4
3,519,562	-				-0.6
3,519,562	-				-1.4
3,519,564	+				+0.9
3,519,564	+				-0.2
3,519,564	+				+3.0
3,519,565	-				+2.4
3,519,600	-				-0.8
3,519,853	+				-0.7
3,519,853	+				+3.4
3,519,854	-				-0.6
3,519,854	-				-1.6
3,519,854	-				-0.2
3,519,854	-				+0.2
3,520,020	+		PFLU_RS15665	0.12	+1.0
3,520,020	+		PFLU_RS15665	0.12	-0.4
3,520,021	-		PFLU_RS15665	0.12	+4.0
3,520,021	-		PFLU_RS15665	0.12	+1.0
3,520,021	-		PFLU_RS15665	0.12	-0.9
3,520,122	+		PFLU_RS15665	0.15	+0.4
3,520,122	+		PFLU_RS15665	0.15	+0.7
3,520,122	+		PFLU_RS15665	0.15	+0.4
3,520,123	-		PFLU_RS15665	0.15	-1.4
3,520,123	-		PFLU_RS15665	0.15	+2.8
3,520,123	-		PFLU_RS15665	0.15	+1.2
3,520,161	-		PFLU_RS15665	0.16	-1.2
3,520,161	-		PFLU_RS15665	0.16	+5.1
3,520,342	-		PFLU_RS15665	0.22	+0.4
3,520,342	-		PFLU_RS15665	0.22	-1.8
3,520,548	-		PFLU_RS15665	0.29	-1.8
3,520,906	+		PFLU_RS15665	0.40	+2.0
3,520,906	+		PFLU_RS15665	0.40	+1.2
3,520,907	-		PFLU_RS15665	0.40	-0.2
3,520,907	-		PFLU_RS15665	0.40	-0.6
3,520,907	-		PFLU_RS15665	0.40	-1.8
3,520,907	-		PFLU_RS15665	0.40	-0.9
3,520,907	-		PFLU_RS15665	0.40	-0.6
3,520,908	+		PFLU_RS15665	0.40	+0.4
3,520,908	+		PFLU_RS15665	0.40	+1.0
3,520,908	+		PFLU_RS15665	0.40	-0.6
3,520,908	+		PFLU_RS15665	0.40	-2.1
3,520,908	+		PFLU_RS15665	0.40	-1.4
3,520,908	+		PFLU_RS15665	0.40	-3.1
3,520,908	+		PFLU_RS15665	0.40	-0.9
3,520,908	+		PFLU_RS15665	0.40	-2.1
3,520,909	-		PFLU_RS15665	0.40	+2.8
3,520,909	-		PFLU_RS15665	0.40	+2.3
3,520,909	-		PFLU_RS15665	0.40	+2.9
3,520,995	+		PFLU_RS15665	0.43	-0.6
3,520,996	-		PFLU_RS15665	0.43	+4.4
3,521,073	+		PFLU_RS15665	0.46	+0.1
3,521,073	+		PFLU_RS15665	0.46	-1.6
3,521,073	+		PFLU_RS15665	0.46	+3.7
3,521,074	-		PFLU_RS15665	0.46	+0.3
3,521,095	+		PFLU_RS15665	0.46	-0.8
3,521,096	-		PFLU_RS15665	0.46	+0.4
3,521,096	-		PFLU_RS15665	0.46	-0.5
3,521,096	-		PFLU_RS15665	0.46	-0.5
3,521,119	-		PFLU_RS15665	0.47	-1.6
3,521,144	+		PFLU_RS15665	0.48	+2.1
3,521,145	-		PFLU_RS15665	0.48	+2.7
3,521,152	-		PFLU_RS15665	0.48	+3.1
3,521,152	-		PFLU_RS15665	0.48	-1.6
3,521,205	+		PFLU_RS15665	0.50	+2.1
3,521,205	+		PFLU_RS15665	0.50	-0.9
3,521,205	+		PFLU_RS15665	0.50	+2.2
3,521,205	+		PFLU_RS15665	0.50	-0.4
3,521,205	+		PFLU_RS15665	0.50	+0.5
3,521,205	+		PFLU_RS15665	0.50	-0.6
3,521,206	-		PFLU_RS15665	0.50	+4.8
3,521,206	-		PFLU_RS15665	0.50	+3.2
3,521,206	-		PFLU_RS15665	0.50	-0.1
3,521,206	-		PFLU_RS15665	0.50	-0.4
3,521,221	+		PFLU_RS15665	0.50	-0.2
3,521,221	+		PFLU_RS15665	0.50	-0.9
3,521,221	+		PFLU_RS15665	0.50	-0.2
3,521,222	-		PFLU_RS15665	0.51	-0.4
3,521,222	-		PFLU_RS15665	0.51	+1.4
3,521,222	-		PFLU_RS15665	0.51	+0.4
3,521,222	-		PFLU_RS15665	0.51	-0.4
3,521,222	-		PFLU_RS15665	0.51	-2.2
3,521,246	+		PFLU_RS15665	0.51	+1.4
3,521,247	-		PFLU_RS15665	0.51	-0.9
3,521,349	-		PFLU_RS15665	0.55	+1.4
3,521,364	+		PFLU_RS15665	0.55	+0.1
3,521,364	+		PFLU_RS15665	0.55	-2.7
3,521,364	+		PFLU_RS15665	0.55	-1.9
3,521,364	+		PFLU_RS15665	0.55	+2.4
3,521,364	+		PFLU_RS15665	0.55	-0.2
3,521,365	-		PFLU_RS15665	0.55	-1.4
3,521,365	-		PFLU_RS15665	0.55	-0.9
3,521,365	-		PFLU_RS15665	0.55	-1.4
3,521,365	-		PFLU_RS15665	0.55	-1.9
3,521,428	+		PFLU_RS15665	0.57	+2.4
3,521,590	+		PFLU_RS15665	0.62	-1.7
3,521,590	+		PFLU_RS15665	0.62	-0.2
3,521,590	+		PFLU_RS15665	0.62	+1.4
3,521,590	+		PFLU_RS15665	0.62	-2.1
3,521,590	+		PFLU_RS15665	0.62	-2.2
3,521,590	+		PFLU_RS15665	0.62	-0.6
3,521,590	+		PFLU_RS15665	0.62	-2.7
3,521,590	+		PFLU_RS15665	0.62	+0.4
3,521,591	-		PFLU_RS15665	0.62	+4.8
3,521,591	-		PFLU_RS15665	0.62	-1.2
3,521,591	-		PFLU_RS15665	0.62	-0.3
3,521,591	-		PFLU_RS15665	0.62	+1.4
3,521,673	+		PFLU_RS15665	0.65	-1.8
3,521,673	+		PFLU_RS15665	0.65	-2.4
3,521,711	+		PFLU_RS15665	0.66	-0.5
3,521,712	-		PFLU_RS15665	0.66	+2.4
3,521,712	-		PFLU_RS15665	0.66	-0.6
3,521,739	+		PFLU_RS15665	0.67	+1.5
3,521,739	+		PFLU_RS15665	0.67	-1.9
3,521,740	-		PFLU_RS15665	0.67	-0.8
3,521,784	+		PFLU_RS15665	0.69	-1.7
3,521,803	+		PFLU_RS15665	0.69	-0.6
3,521,803	+		PFLU_RS15665	0.69	+0.4
3,522,019	+		PFLU_RS15665	0.76	+1.0
3,522,019	+		PFLU_RS15665	0.76	+0.4
3,522,020	-		PFLU_RS15665	0.76	-3.5
3,522,128	+		PFLU_RS15665	0.80	+0.4
3,522,129	-		PFLU_RS15665	0.80	-0.9
3,522,231	+		PFLU_RS15665	0.83	-2.5
3,522,231	+		PFLU_RS15665	0.83	-0.8
3,522,231	+		PFLU_RS15665	0.83	-1.8
3,522,231	+		PFLU_RS15665	0.83	-0.5
3,522,231	+		PFLU_RS15665	0.83	+1.2
3,522,231	+		PFLU_RS15665	0.83	-1.9
3,522,231	+		PFLU_RS15665	0.83	-0.6
3,522,231	+		PFLU_RS15665	0.83	-0.9
3,522,231	+		PFLU_RS15665	0.83	+1.4
3,522,231	+		PFLU_RS15665	0.83	+0.6
3,522,231	+		PFLU_RS15665	0.83	+1.4
3,522,231	+		PFLU_RS15665	0.83	+1.0
3,522,231	+		PFLU_RS15665	0.83	+1.4
3,522,231	+		PFLU_RS15665	0.83	-2.5
3,522,231	+		PFLU_RS15665	0.83	+5.6
3,522,231	+		PFLU_RS15665	0.83	+0.5
3,522,231	+		PFLU_RS15665	0.83	-1.8
3,522,231	+		PFLU_RS15665	0.83	-0.2
3,522,231	+		PFLU_RS15665	0.83	-0.5
3,522,231	+		PFLU_RS15665	0.83	+1.0
3,522,231	+		PFLU_RS15665	0.83	+0.7
3,522,231	+		PFLU_RS15665	0.83	-0.5
3,522,231	+		PFLU_RS15665	0.83	-0.6
3,522,232	-		PFLU_RS15665	0.83	+1.4
3,522,232	-		PFLU_RS15665	0.83	+2.4
3,522,232	-		PFLU_RS15665	0.83	-0.3
3,522,232	-		PFLU_RS15665	0.83	+3.5
3,522,232	-		PFLU_RS15665	0.83	-1.2
3,522,232	-		PFLU_RS15665	0.83	+0.6
3,522,232	-		PFLU_RS15665	0.83	-2.3
3,522,232	-		PFLU_RS15665	0.83	+0.2
3,522,232	-		PFLU_RS15665	0.83	-0.2
3,522,232	-		PFLU_RS15665	0.83	+2.7
3,522,232	-		PFLU_RS15665	0.83	+0.4
3,522,232	-		PFLU_RS15665	0.83	+5.3
3,522,334	-		PFLU_RS15665	0.86	-0.8
3,522,345	+		PFLU_RS15665	0.87	+2.1
3,522,345	+		PFLU_RS15665	0.87	+1.3
3,522,346	-		PFLU_RS15665	0.87	+0.8
3,522,346	-		PFLU_RS15665	0.87	+1.1
3,522,346	-		PFLU_RS15665	0.87	-0.2
3,522,368	+		PFLU_RS15665	0.87	-2.3
3,522,369	-		PFLU_RS15665	0.87	-0.9
3,522,528	+				+1.2
3,522,529	-				+2.3
3,522,529	-				+3.7
3,522,529	-				-0.9
3,522,531	+				+0.1
3,522,532	-				+0.4
3,522,532	-				-0.8
3,522,532	-				-0.2
3,522,532	-				+0.4
3,522,616	-				-0.2
3,522,616	-				-0.5
3,522,702	-				-1.9
3,523,041	+		PFLU_RS15670	0.24	+0.1
3,523,041	+		PFLU_RS15670	0.24	-1.8
3,523,041	+		PFLU_RS15670	0.24	+0.6
3,523,042	-		PFLU_RS15670	0.25	-0.4
3,523,042	-		PFLU_RS15670	0.25	-0.9
3,523,042	-		PFLU_RS15670	0.25	-0.8
3,523,042	-		PFLU_RS15670	0.25	-0.9
3,523,045	+		PFLU_RS15670	0.25	-2.6
3,523,045	+		PFLU_RS15670	0.25	+3.0
3,523,045	+		PFLU_RS15670	0.25	-0.6
3,523,045	+		PFLU_RS15670	0.25	+0.0
3,523,045	+		PFLU_RS15670	0.25	+2.4
3,523,045	+		PFLU_RS15670	0.25	+3.1
3,523,045	+		PFLU_RS15670	0.25	-0.2
3,523,045	+		PFLU_RS15670	0.25	+1.3
3,523,045	+		PFLU_RS15670	0.25	+1.1
3,523,045	+		PFLU_RS15670	0.25	-1.1
3,523,045	+		PFLU_RS15670	0.25	+2.8
3,523,045	+		PFLU_RS15670	0.25	+2.1
3,523,045	+		PFLU_RS15670	0.25	+0.8
3,523,045	+		PFLU_RS15670	0.25	-0.6
3,523,045	+		PFLU_RS15670	0.25	+3.5
3,523,045	+		PFLU_RS15670	0.25	+1.4
3,523,045	+		PFLU_RS15670	0.25	-1.3
3,523,045	+		PFLU_RS15670	0.25	+1.3
3,523,045	+		PFLU_RS15670	0.25	-1.4
3,523,045	+		PFLU_RS15670	0.25	+1.2
3,523,045	+		PFLU_RS15670	0.25	+1.9
3,523,045	+		PFLU_RS15670	0.25	-2.2
3,523,045	+		PFLU_RS15670	0.25	-0.9
3,523,045	+		PFLU_RS15670	0.25	+0.4
3,523,045	+		PFLU_RS15670	0.25	+2.7
3,523,046	-		PFLU_RS15670	0.25	+0.9
3,523,046	-		PFLU_RS15670	0.25	+0.9
3,523,046	-		PFLU_RS15670	0.25	+2.4
3,523,046	-		PFLU_RS15670	0.25	-1.2
3,523,046	-		PFLU_RS15670	0.25	+0.4
3,523,046	-		PFLU_RS15670	0.25	+3.0
3,523,046	-		PFLU_RS15670	0.25	+2.7
3,523,046	-		PFLU_RS15670	0.25	+1.4
3,523,046	-		PFLU_RS15670	0.25	+4.1
3,523,046	-		PFLU_RS15670	0.25	-0.6
3,523,046	-		PFLU_RS15670	0.25	-1.6
3,523,046	-		PFLU_RS15670	0.25	-0.8
3,523,046	-		PFLU_RS15670	0.25	-1.8
3,523,046	-		PFLU_RS15670	0.25	-0.1
3,523,046	-		PFLU_RS15670	0.25	-0.2
3,523,046	-		PFLU_RS15670	0.25	+3.3
3,523,046	-		PFLU_RS15670	0.25	+2.7
3,523,046	-		PFLU_RS15670	0.25	+0.4
3,523,046	-		PFLU_RS15670	0.25	+0.8
3,523,046	-		PFLU_RS15670	0.25	-0.2
3,523,046	-		PFLU_RS15670	0.25	-1.6
3,523,127	+		PFLU_RS15670	0.32	+3.3
3,523,282	+		PFLU_RS15670	0.46	+0.2
3,523,282	+		PFLU_RS15670	0.46	-0.6
3,523,283	-		PFLU_RS15670	0.46	+2.3
3,523,283	-		PFLU_RS15670	0.46	-0.9
3,523,283	-		PFLU_RS15670	0.46	-1.5
3,523,283	-		PFLU_RS15670	0.46	+0.6
3,523,368	+		PFLU_RS15670	0.53	-1.4
3,523,368	+		PFLU_RS15670	0.53	+1.1
3,523,369	-		PFLU_RS15670	0.53	+2.6
3,523,403	-		PFLU_RS15670	0.56	+3.4
3,523,561	+		PFLU_RS15670	0.70	-2.1
3,523,562	-		PFLU_RS15670	0.70	+2.1
3,523,641	+		PFLU_RS15670	0.77	+0.4