Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS11255

Experiment: L-Carnitine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Carnitine (C)
2,489,286	+				+2.7
2,489,286	+				-2.1
2,489,286	+				+0.5
2,489,286	+				-0.9
2,489,286	+				+0.9
2,489,286	+				-1.9
2,489,286	+				-0.8
2,489,287	-				+0.6
2,489,287	-				+1.5
2,489,287	-				+1.2
2,489,290	+				-0.8
2,489,290	+				+3.1
2,489,290	+				+0.4
2,489,290	+				-1.7
2,489,290	+				-0.1
2,489,290	+				-1.3
2,489,291	-				+1.6
2,489,291	-				-0.5
2,489,291	-				+1.8
2,489,291	-				-0.9
2,489,291	-				+2.6
2,489,337	+				-1.1
2,489,339	+				+0.6
2,489,339	+				-1.9
2,489,339	+				+1.1
2,489,339	+				+2.0
2,489,339	+				+1.2
2,489,339	+				+2.3
2,489,340	-				-1.3
2,489,340	-				-0.5
2,489,340	-				+1.5
2,489,340	-				-0.5
2,489,340	-				+3.6
2,489,349	+				-0.1
2,489,349	+				+1.0
2,489,350	-				+0.8
2,489,350	-				+0.5
2,489,407	-				+2.8
2,489,454	+				-1.2
2,489,454	+				+2.2
2,489,454	+				+2.6
2,489,454	+				+0.9
2,489,454	+				+0.8
2,489,454	+				+0.6
2,489,466	+				+0.5
2,489,556	+				-0.7
2,489,556	+				+0.5
2,489,556	+				+1.0
2,489,592	-				+1.9
2,489,592	-				-0.1
2,489,592	-				-1.8
2,489,592	-				-2.2
2,489,753	+				+0.5
2,489,753	+				-0.4
2,489,753	+				+1.3
2,489,753	+				-1.6
2,489,753	+				-0.1
2,489,753	+				+0.6
2,489,781	-				+4.4
2,489,781	-				+0.7
2,489,792	-				+0.9
2,489,792	-				-2.4
2,489,851	+				-0.8
2,489,851	+				-2.1
2,489,851	+				-0.1
2,489,851	+				-0.8
2,489,852	-				+0.4
2,489,852	-				-1.9
2,489,941	+				+0.2
2,489,941	+				-1.7
2,489,941	+				-1.1
2,489,941	+				-0.8
2,489,941	+				-1.0
2,489,941	+				-0.1
2,489,977	-				-0.8
2,489,977	-				-2.1
2,489,977	-				-2.4
2,489,977	-				-1.3
2,489,977	-				+0.1
2,490,138	+				-1.1
2,490,138	+				+2.1
2,490,138	+				+4.5
2,490,138	+				-1.5
2,490,138	+				+0.1
2,490,138	+				-0.1
2,490,138	+				+2.3
2,490,138	+				+0.9
2,490,166	-				+1.3
2,490,177	-				-0.1
2,490,177	-				-1.7
2,490,177	-				-0.3
2,490,177	-				-0.1
2,490,177	-				-1.8
2,490,224	+				+2.4
2,490,235	-				-1.1
2,490,246	+				+2.9
2,490,279	+				-0.1
2,490,279	+				-0.1
2,490,279	+				-2.1
2,490,279	+				-0.3
2,490,280	-				+2.1
2,490,336	+		PFLU_RS11255	0.11	-1.5
2,490,336	+		PFLU_RS11255	0.11	-1.5
2,490,336	+		PFLU_RS11255	0.11	+0.3
2,490,337	-		PFLU_RS11255	0.11	-1.1
2,490,337	-		PFLU_RS11255	0.11	+0.5
2,490,362	+		PFLU_RS11255	0.14	-1.8
2,490,362	+		PFLU_RS11255	0.14	+0.2
2,490,363	-		PFLU_RS11255	0.14	-0.1
2,490,484	+		PFLU_RS11255	0.27	-2.2
2,490,582	+		PFLU_RS11255	0.37	+1.4
2,490,583	-		PFLU_RS11255	0.37	+1.5
2,490,583	-		PFLU_RS11255	0.37	-0.8
2,490,583	-		PFLU_RS11255	0.37	+0.6
2,490,606	-		PFLU_RS11255	0.40	-1.1
2,490,646	-		PFLU_RS11255	0.44	+1.6
2,490,646	-		PFLU_RS11255	0.44	-2.7
2,490,790	+		PFLU_RS11255	0.59	-0.1
2,490,790	+		PFLU_RS11255	0.59	-0.3
2,490,790	+		PFLU_RS11255	0.59	-0.7
2,490,790	+		PFLU_RS11255	0.59	-0.1
2,490,790	+		PFLU_RS11255	0.59	+0.5
2,490,790	+		PFLU_RS11255	0.59	+1.4
2,490,790	+		PFLU_RS11255	0.59	-1.7
2,490,791	-		PFLU_RS11255	0.59	+2.5
2,490,791	-		PFLU_RS11255	0.59	-1.7
2,490,791	-		PFLU_RS11255	0.59	+0.1
2,490,791	-		PFLU_RS11255	0.59	-1.9
2,490,791	-		PFLU_RS11255	0.59	-0.8
2,490,791	-		PFLU_RS11255	0.59	-2.4
2,490,791	-		PFLU_RS11255	0.59	+2.3
2,490,794	+		PFLU_RS11255	0.60	-0.5
2,490,794	+		PFLU_RS11255	0.60	+0.4
2,490,794	+		PFLU_RS11255	0.60	+0.5
2,490,794	+		PFLU_RS11255	0.60	-0.5
2,490,794	+		PFLU_RS11255	0.60	-1.4
2,490,794	+		PFLU_RS11255	0.60	-0.1
2,490,794	+		PFLU_RS11255	0.60	-0.1
2,490,795	-		PFLU_RS11255	0.60	+0.9
2,490,795	-		PFLU_RS11255	0.60	+1.6
2,490,795	-		PFLU_RS11255	0.60	-0.6
2,490,804	+		PFLU_RS11255	0.61	-1.7
2,490,939	+		PFLU_RS11255	0.75	-1.3
2,490,939	+		PFLU_RS11255	0.75	+0.5
2,491,048	+		PFLU_RS11255	0.87	-0.6
2,491,048	+		PFLU_RS11255	0.87	-0.2
2,491,048	+		PFLU_RS11255	0.87	-1.2
2,491,049	-		PFLU_RS11255	0.87	+0.7
2,491,049	-		PFLU_RS11255	0.87	+0.8
2,491,101	+				+0.8
2,491,101	+				-1.3
2,491,101	+				-0.8
2,491,102	-				+0.5
2,491,157	+				+0.3
2,491,157	+				-0.1
2,491,157	+				-1.2
2,491,157	+				+0.2
2,491,158	-				+3.1
2,491,158	-				+2.6
2,491,202	+				-1.3
2,491,244	+				+1.0
2,491,244	+				-1.4
2,491,244	+				+1.1
2,491,244	+				+1.1
2,491,245	-				+1.8
2,491,245	-				-0.9
2,491,245	-				-1.9
2,491,245	-				-1.9
2,491,263	-				+2.4
2,491,277	+				+0.6
2,491,277	+				-0.5
2,491,277	+				-1.4
2,491,277	+				+2.2
2,491,277	+				-1.3
2,491,277	+				+0.8
2,491,277	+				-2.2
2,491,278	-				-0.3
2,491,278	-				-1.7
2,491,278	-				+2.1
2,491,278	-				+1.7
2,491,278	-				+0.6
2,491,278	-				+1.1
2,491,278	-				-0.6
2,491,278	-				+0.8
2,491,278	-				-0.1
2,491,278	-				+3.6
2,491,278	-				-0.6
2,491,278	-				-0.1
2,491,278	-				-0.3
2,491,305	+				-3.1
2,491,305	+				-1.8
2,491,305	+				-2.9
2,491,305	+				-0.2
2,491,305	+				-1.1
2,491,305	+				-0.3
2,491,305	+				-2.1
2,491,306	-				-0.3
2,491,306	-				-1.9
2,491,306	-				-2.1
2,491,306	-				-1.6
2,491,306	-				+0.7
2,491,306	-				+0.3
2,491,306	-				-1.3
2,491,306	-				+1.5
2,491,306	-				-0.1
2,491,353	+				-0.8
2,491,353	+				+0.8
2,491,353	+				+0.4
2,491,354	-				+0.8
2,491,498	-		PFLU_RS11260	0.14	+1.9
2,491,498	-		PFLU_RS11260	0.14	-0.1
2,491,631	+		PFLU_RS11260	0.23	-0.2
2,491,632	-		PFLU_RS11260	0.23	-2.4
2,491,722	-		PFLU_RS11260	0.29	+0.5
2,491,761	+		PFLU_RS11260	0.32	+0.8
2,491,761	+		PFLU_RS11260	0.32	-1.3
2,491,761	+		PFLU_RS11260	0.32	-1.8
2,491,762	-		PFLU_RS11260	0.32	-3.9
2,491,762	-		PFLU_RS11260	0.32	-0.5
2,491,762	-		PFLU_RS11260	0.32	-1.0
2,491,977	+		PFLU_RS11260	0.46	+1.8
2,491,977	+		PFLU_RS11260	0.46	+0.5
2,491,978	-		PFLU_RS11260	0.46	+1.8
2,491,978	-		PFLU_RS11260	0.46	+0.2
2,491,978	-		PFLU_RS11260	0.46	+2.3
2,491,978	-		PFLU_RS11260	0.46	+1.6
2,491,978	-		PFLU_RS11260	0.46	+1.1
2,491,983	+		PFLU_RS11260	0.47	+1.2
2,491,984	-		PFLU_RS11260	0.47	+1.4
2,491,984	-		PFLU_RS11260	0.47	-0.5
2,491,984	-		PFLU_RS11260	0.47	-0.3
2,492,126	+		PFLU_RS11260	0.56	-1.9
2,492,126	+		PFLU_RS11260	0.56	-0.3
2,492,127	-		PFLU_RS11260	0.56	-0.1
2,492,127	-		PFLU_RS11260	0.56	-0.8
2,492,146	+		PFLU_RS11260	0.57	+1.8
2,492,147	-		PFLU_RS11260	0.58	+1.5