Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS20380

Experiment: Cytidine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine (C)
4,599,121	+		PFLU_RS20375	0.40	-1.2
4,599,122	-		PFLU_RS20375	0.40	-2.8
4,599,122	-		PFLU_RS20375	0.40	-1.7
4,599,196	+		PFLU_RS20375	0.45	-3.6
4,599,196	+		PFLU_RS20375	0.45	-0.9
4,599,201	+		PFLU_RS20375	0.45	-0.5
4,599,201	+		PFLU_RS20375	0.45	-1.9
4,599,201	+		PFLU_RS20375	0.45	-1.2
4,599,201	+		PFLU_RS20375	0.45	-3.0
4,599,201	+		PFLU_RS20375	0.45	-2.4
4,599,201	+		PFLU_RS20375	0.45	-1.2
4,599,201	+		PFLU_RS20375	0.45	-0.7
4,599,202	-		PFLU_RS20375	0.45	-2.1
4,599,202	-		PFLU_RS20375	0.45	-0.5
4,599,202	-		PFLU_RS20375	0.45	-1.2
4,599,202	-		PFLU_RS20375	0.45	-2.2
4,599,202	-		PFLU_RS20375	0.45	-2.6
4,599,202	-		PFLU_RS20375	0.45	-3.2
4,599,202	-		PFLU_RS20375	0.45	-0.5
4,599,202	-		PFLU_RS20375	0.45	-2.4
4,599,202	-		PFLU_RS20375	0.45	-1.8
4,599,202	-		PFLU_RS20375	0.45	-2.7
4,599,363	+		PFLU_RS20375	0.55	-0.9
4,599,363	+		PFLU_RS20375	0.55	-1.9
4,599,363	+		PFLU_RS20375	0.55	-3.9
4,599,363	+		PFLU_RS20375	0.55	-0.5
4,599,363	+		PFLU_RS20375	0.55	-1.7
4,599,363	+		PFLU_RS20375	0.55	-2.4
4,599,363	+		PFLU_RS20375	0.55	-3.0
4,599,363	+		PFLU_RS20375	0.55	+0.7
4,599,364	-		PFLU_RS20375	0.55	-2.7
4,599,364	-		PFLU_RS20375	0.55	-1.2
4,599,364	-		PFLU_RS20375	0.55	-2.4
4,599,364	-		PFLU_RS20375	0.55	-2.6
4,599,364	-		PFLU_RS20375	0.55	-4.0
4,599,364	-		PFLU_RS20375	0.55	-1.9
4,599,364	-		PFLU_RS20375	0.55	-2.1
4,599,364	-		PFLU_RS20375	0.55	-3.2
4,599,364	-		PFLU_RS20375	0.55	-1.3
4,599,364	-		PFLU_RS20375	0.55	-1.6
4,599,458	-		PFLU_RS20375	0.61	-2.5
4,599,459	+		PFLU_RS20375	0.61	-2.7
4,599,459	+		PFLU_RS20375	0.61	-1.4
4,599,459	+		PFLU_RS20375	0.61	-1.2
4,599,459	+		PFLU_RS20375	0.61	-0.9
4,599,459	+		PFLU_RS20375	0.61	-2.1
4,599,459	+		PFLU_RS20375	0.61	-1.6
4,599,459	+		PFLU_RS20375	0.61	-2.1
4,599,460	-		PFLU_RS20375	0.62	-3.8
4,599,460	-		PFLU_RS20375	0.62	-2.7
4,599,463	+		PFLU_RS20375	0.62	-1.0
4,599,463	+		PFLU_RS20375	0.62	-0.9
4,599,463	+		PFLU_RS20375	0.62	-2.7
4,599,464	-		PFLU_RS20375	0.62	-1.1
4,599,464	-		PFLU_RS20375	0.62	-2.0
4,599,464	-		PFLU_RS20375	0.62	-3.3
4,599,560	+		PFLU_RS20375	0.68	-1.9
4,599,560	+		PFLU_RS20375	0.68	-2.2
4,599,560	+		PFLU_RS20375	0.68	-2.1
4,599,560	+		PFLU_RS20375	0.68	-0.6
4,599,560	+		PFLU_RS20375	0.68	-2.2
4,599,560	+		PFLU_RS20375	0.68	-2.6
4,599,560	+		PFLU_RS20375	0.68	-2.1
4,599,560	+		PFLU_RS20375	0.68	-3.5
4,599,560	+		PFLU_RS20375	0.68	-2.2
4,599,560	+		PFLU_RS20375	0.68	-0.9
4,599,560	+		PFLU_RS20375	0.68	-1.5
4,599,560	+		PFLU_RS20375	0.68	-1.0
4,599,560	+		PFLU_RS20375	0.68	-1.7
4,599,561	-		PFLU_RS20375	0.68	-2.1
4,599,561	-		PFLU_RS20375	0.68	-1.5
4,599,561	-		PFLU_RS20375	0.68	-2.4
4,599,561	-		PFLU_RS20375	0.68	+0.1
4,599,561	-		PFLU_RS20375	0.68	+0.1
4,599,561	-		PFLU_RS20375	0.68	-1.6
4,599,561	-		PFLU_RS20375	0.68	-2.0
4,599,561	-		PFLU_RS20375	0.68	-2.6
4,599,561	-		PFLU_RS20375	0.68	-2.5
4,599,561	-		PFLU_RS20375	0.68	-0.5
4,599,561	-		PFLU_RS20375	0.68	-2.5
4,599,561	-		PFLU_RS20375	0.68	-1.5
4,599,561	-		PFLU_RS20375	0.68	-0.9
4,599,843	+		PFLU_RS20375	0.86	-3.3
4,599,843	+		PFLU_RS20375	0.86	-1.2
4,599,843	+		PFLU_RS20375	0.86	-3.3
4,599,844	-		PFLU_RS20375	0.86	-0.9
4,599,844	-		PFLU_RS20375	0.86	-0.5
4,599,913	+				-2.6
4,599,913	+				-1.2
4,599,913	+				-1.1
4,599,913	+				-2.7
4,599,914	-				-2.9
4,599,914	-				-3.5
4,599,914	-				-2.5
4,599,914	-				-2.2
4,599,914	-				-2.8
4,599,914	-				-2.1
4,599,914	-				-3.3
4,600,002	+				-2.7
4,600,002	+				-2.0
4,600,002	+				-2.8
4,600,002	+				-0.5
4,600,002	+				-3.8
4,600,002	+				-2.7
4,600,002	+				+0.1
4,600,002	+				-3.0
4,600,002	+				-2.4
4,600,003	-				-2.1
4,600,003	-				-2.2
4,600,003	-				-2.1
4,600,003	-				-2.4
4,600,003	-				-3.2
4,600,057	+				-1.1
4,600,057	+				-0.9
4,600,057	+				-2.2
4,600,057	+				-2.8
4,600,057	+				-1.7
4,600,057	+				-0.5
4,600,058	-				-2.8
4,600,058	-				-3.2
4,600,058	-				-2.8
4,600,058	-				-1.6
4,600,116	+				+0.1
4,600,116	+				-2.1
4,600,117	-				-1.6
4,600,117	-				-1.7
4,600,117	-				-2.5
4,600,117	-				-0.9
4,600,117	-				-2.4
4,600,117	-				-1.2
4,600,117	-				-1.2
4,600,340	+		PFLU_RS20380	0.23	-2.9
4,600,341	-		PFLU_RS20380	0.24	+0.1
4,600,341	-		PFLU_RS20380	0.24	-0.7
4,600,520	-		PFLU_RS20380	0.42	-1.4
4,600,520	-		PFLU_RS20380	0.42	-4.3
4,600,520	-		PFLU_RS20380	0.42	-1.9
4,600,520	-		PFLU_RS20380	0.42	-1.0
4,600,520	-		PFLU_RS20380	0.42	-1.9
4,600,547	+		PFLU_RS20380	0.45	+1.1
4,600,548	-		PFLU_RS20380	0.45	-4.2
4,600,548	-		PFLU_RS20380	0.45	-1.5
4,600,558	+		PFLU_RS20380	0.46	-2.2
4,600,559	-		PFLU_RS20380	0.46	-0.5
4,600,559	-		PFLU_RS20380	0.46	-3.0
4,600,559	-		PFLU_RS20380	0.46	-1.0
4,600,592	-		PFLU_RS20380	0.50	-2.0
4,600,592	-		PFLU_RS20380	0.50	+1.1
4,600,599	+		PFLU_RS20380	0.50	-2.5
4,600,599	+		PFLU_RS20380	0.50	-1.5
4,600,599	+		PFLU_RS20380	0.50	-3.4
4,600,599	+		PFLU_RS20380	0.50	-1.9
4,600,600	-		PFLU_RS20380	0.51	-2.8
4,600,600	-		PFLU_RS20380	0.51	-3.0
4,600,600	-		PFLU_RS20380	0.51	-1.9
4,600,640	+		PFLU_RS20380	0.55	-0.9
4,600,896	+		PFLU_RS20380	0.81	-2.5
4,600,896	+		PFLU_RS20380	0.81	-2.5
4,600,896	+		PFLU_RS20380	0.81	-2.4
4,600,897	-		PFLU_RS20380	0.81	+1.1
4,601,009	+				-0.5
4,601,009	+				-0.9
4,601,009	+				-1.2
4,601,010	-				-1.5
4,601,010	-				-1.9
4,601,010	-				-3.2
4,601,030	+				+1.1
4,601,030	+				-3.2
4,601,030	+				-2.6
4,601,030	+				-0.5
4,601,030	+				-0.7
4,601,030	+				-2.2
4,601,031	-				-0.5
4,601,031	-				-1.2
4,601,031	-				-3.5
4,601,031	-				-2.2
4,601,031	-				-2.9
4,601,031	-				+0.1
4,601,031	-				-1.7
4,601,031	-				-1.5
4,601,031	-				-2.4
4,601,091	+				+1.1
4,601,091	+				-1.6
4,601,091	+				-1.9
4,601,091	+				-1.7
4,601,092	-				-3.2
4,601,092	-				-1.1
4,601,092	-				-2.9
4,601,092	-				-1.5
4,601,092	-				-4.0
4,601,092	-				-2.8
4,601,092	-				-2.2
4,601,092	-				-2.0
4,601,092	-				-3.0
4,601,097	+				+1.1
4,601,097	+				-2.1
4,601,097	+				-2.7
4,601,097	+				-2.6
4,601,097	+				-2.1
4,601,098	-				-1.2
4,601,098	-				-2.4
4,601,157	+				-1.7
4,601,157	+				-2.2
4,601,158	-				-1.1
4,601,158	-				-2.1
4,601,173	-				-2.1
4,601,224	+				-0.5
4,601,224	+				-1.5
4,601,224	+				+0.1
4,601,224	+				-3.1
4,601,224	+				-2.5
4,601,225	-				-2.8
4,601,225	-				-1.2
4,601,344	+				+1.4
4,601,345	-				+1.4
4,601,359	+				-0.9
4,601,359	+				-0.3
4,601,359	+				+1.3
4,601,359	+				+0.3
4,601,359	+				-0.2
4,601,359	+				-0.1
4,601,359	+				+3.4
4,601,360	-				+1.8
4,601,360	-				+1.9
4,601,360	-				+1.1
4,601,360	-				+3.1
4,601,360	-				+1.5
4,601,360	-				+1.9
4,601,451	+				+1.1
4,601,479	+				-1.3
4,601,479	+				-0.4
4,601,480	-				+1.0
4,601,481	+				+0.3
4,601,535	+				+0.2
4,601,549	+				+0.0
4,601,549	+				+1.7
4,601,590	+				-0.4
4,601,590	+				-0.6
4,601,590	+				-0.2
4,601,590	+				-0.1
4,601,591	-				-0.1
4,601,591	-				+0.0
4,601,591	-				-0.1
4,601,591	-				+1.1
4,601,591	-				+1.0
4,601,591	-				+2.3
4,601,591	-				+2.0
4,601,591	-				+1.4
4,601,603	+				-1.5
4,601,603	+				-0.0
4,601,603	+				+1.3
4,601,603	+				+1.9
4,601,604	-				+0.9
4,601,604	-				+0.1
4,601,604	-				+2.0
4,601,810	+		PFLU_RS20385	0.16	+0.6
4,601,810	+		PFLU_RS20385	0.16	-1.2
4,601,810	+		PFLU_RS20385	0.16	+2.9
4,601,810	+		PFLU_RS20385	0.16	+0.2
4,601,810	+		PFLU_RS20385	0.16	+0.0
4,601,810	+		PFLU_RS20385	0.16	-0.7
4,601,810	+		PFLU_RS20385	0.16	+0.3
4,601,810	+		PFLU_RS20385	0.16	+1.4
4,601,811	-		PFLU_RS20385	0.16	+0.1
4,601,811	-		PFLU_RS20385	0.16	+0.7
4,601,811	-		PFLU_RS20385	0.16	+0.9
4,601,811	-		PFLU_RS20385	0.16	+2.5
4,601,811	-		PFLU_RS20385	0.16	+0.8
4,601,811	-		PFLU_RS20385	0.16	-0.3
4,601,811	-		PFLU_RS20385	0.16	-0.5
4,602,032	+		PFLU_RS20385	0.36	-0.1
4,602,032	+		PFLU_RS20385	0.36	-1.1
4,602,033	-		PFLU_RS20385	0.36	+1.1
4,602,033	-		PFLU_RS20385	0.36	+2.1