Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS10315

Experiment: Cytidine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine (C)
2,273,283	-		PFLU_RS10305	0.69	+2.1
2,273,302	-		PFLU_RS10305	0.71	+0.8
2,273,389	+		PFLU_RS10305	0.83	+0.9
2,273,390	-		PFLU_RS10305	0.84	+0.3
2,273,390	-		PFLU_RS10305	0.84	+0.7
2,273,390	-		PFLU_RS10305	0.84	+1.7
2,273,460	-				+2.5
2,273,465	+				-0.7
2,273,519	+				+1.5
2,273,572	+				+1.1
2,273,573	-				+2.1
2,273,596	-		PFLU_RS10310	0.10	+0.1
2,273,705	+		PFLU_RS10310	0.25	+1.1
2,273,730	+		PFLU_RS10310	0.29	-0.1
2,273,747	+		PFLU_RS10310	0.31	-0.2
2,273,748	-		PFLU_RS10310	0.31	+0.3
2,273,748	-		PFLU_RS10310	0.31	-0.1
2,273,778	+		PFLU_RS10310	0.36	+1.1
2,273,787	-		PFLU_RS10310	0.37	+0.0
2,273,796	+		PFLU_RS10310	0.38	-0.7
2,273,797	-		PFLU_RS10310	0.38	+0.1
2,273,818	+		PFLU_RS10310	0.41	-0.1
2,273,819	-		PFLU_RS10310	0.41	+2.3
2,273,856	+		PFLU_RS10310	0.46	-0.3
2,273,857	-		PFLU_RS10310	0.46	+1.3
2,273,857	-		PFLU_RS10310	0.46	-0.2
2,273,857	-		PFLU_RS10310	0.46	+0.3
2,273,857	-		PFLU_RS10310	0.46	+1.7
2,273,857	-		PFLU_RS10310	0.46	+0.8
2,273,962	-		PFLU_RS10310	0.61	+1.1
2,274,075	+		PFLU_RS10310	0.76	+0.6
2,274,075	+		PFLU_RS10310	0.76	+2.6
2,274,075	+		PFLU_RS10310	0.76	+1.6
2,274,075	+		PFLU_RS10310	0.76	+0.7
2,274,075	+		PFLU_RS10310	0.76	+0.9
2,274,075	+		PFLU_RS10310	0.76	+0.5
2,274,076	-		PFLU_RS10310	0.77	+2.1
2,274,076	-		PFLU_RS10310	0.77	-0.0
2,274,076	-		PFLU_RS10310	0.77	+0.9
2,274,076	-		PFLU_RS10310	0.77	+2.2
2,274,076	-		PFLU_RS10310	0.77	+2.6
2,274,076	-		PFLU_RS10310	0.77	+1.3
2,274,094	-		PFLU_RS10310	0.79	+1.1
2,274,234	+				+2.0
2,274,345	+				-1.1
2,274,345	+				+0.6
2,274,645	+		PFLU_RS10315	0.35	-1.3
2,274,645	+		PFLU_RS10315	0.35	-0.1
2,274,645	+		PFLU_RS10315	0.35	+0.9
2,274,833	+		PFLU_RS10315	0.52	-0.2
2,274,833	+		PFLU_RS10315	0.52	+2.9
2,274,834	-		PFLU_RS10315	0.52	+1.6
2,274,834	-		PFLU_RS10315	0.52	+2.2
2,274,834	-		PFLU_RS10315	0.52	+0.5
2,274,834	-		PFLU_RS10315	0.52	+0.9
2,274,845	+		PFLU_RS10315	0.53	+0.9
2,274,845	+		PFLU_RS10315	0.53	+1.3
2,274,845	+		PFLU_RS10315	0.53	+1.5
2,274,845	+		PFLU_RS10315	0.53	-0.8
2,274,845	+		PFLU_RS10315	0.53	+1.2
2,274,845	+		PFLU_RS10315	0.53	-0.6
2,274,846	-		PFLU_RS10315	0.53	+1.4
2,274,846	-		PFLU_RS10315	0.53	+0.9
2,274,846	-		PFLU_RS10315	0.53	-0.2
2,274,846	-		PFLU_RS10315	0.53	+0.4
2,274,846	-		PFLU_RS10315	0.53	+0.6
2,274,846	-		PFLU_RS10315	0.53	+1.1
2,274,857	+		PFLU_RS10315	0.54	+1.9
2,274,857	+		PFLU_RS10315	0.54	+2.0
2,274,857	+		PFLU_RS10315	0.54	-0.2
2,274,858	-		PFLU_RS10315	0.54	+2.7
2,274,858	-		PFLU_RS10315	0.54	+0.5
2,274,858	-		PFLU_RS10315	0.54	-0.7
2,274,905	+		PFLU_RS10315	0.58	+1.5
2,274,905	+		PFLU_RS10315	0.58	-1.7
2,274,905	+		PFLU_RS10315	0.58	+0.6
2,274,905	+		PFLU_RS10315	0.58	-0.3
2,274,905	+		PFLU_RS10315	0.58	-1.7
2,274,905	+		PFLU_RS10315	0.58	+0.7
2,274,905	+		PFLU_RS10315	0.58	+2.7
2,274,906	-		PFLU_RS10315	0.58	+0.6
2,274,906	-		PFLU_RS10315	0.58	+0.8
2,274,906	-		PFLU_RS10315	0.58	+1.3
2,274,961	+		PFLU_RS10315	0.63	+0.7
2,275,244	+		PFLU_RS10315	0.88	+0.9
2,275,244	+		PFLU_RS10315	0.88	+0.7
2,275,244	+		PFLU_RS10315	0.88	-0.7
2,275,244	+		PFLU_RS10315	0.88	+0.3
2,275,244	+		PFLU_RS10315	0.88	-0.5
2,275,244	+		PFLU_RS10315	0.88	-2.1
2,275,244	+		PFLU_RS10315	0.88	-3.2
2,275,245	-		PFLU_RS10315	0.88	-2.1
2,275,245	-		PFLU_RS10315	0.88	+1.8
2,275,245	-		PFLU_RS10315	0.88	+0.2
2,275,245	-		PFLU_RS10315	0.88	+0.7
2,275,245	-		PFLU_RS10315	0.88	+2.2
2,275,286	+				-0.6
2,275,287	-				-1.4
2,275,332	-				+0.3
2,275,349	+				-1.3
2,275,349	+				-1.1
2,275,349	+				+0.1
2,275,350	-				+0.9
2,275,350	-				-0.5
2,275,350	-				+1.7
2,275,350	-				+0.6
2,275,376	+				+2.5
2,275,376	+				+0.2
2,275,376	+				-1.4
2,275,376	+				-1.7
2,275,377	-				+1.8
2,275,377	-				+1.3
2,275,377	-				-0.4
2,275,377	-				+1.2
2,275,377	-				+2.4
2,275,377	-				+1.3
2,275,377	-				+1.5
2,275,406	+				+2.5
2,275,407	-				-0.8
2,275,407	-				+0.8
2,275,407	-				+3.1
2,275,407	-				+0.9
2,275,428	+				+0.1
2,275,428	+				+0.9
2,275,428	+				+0.2
2,275,429	-				+1.1
2,275,429	-				+0.7
2,275,429	-				+0.4
2,275,429	-				+0.9
2,275,429	-				+1.3
2,275,637	+		PFLU_RS10320	0.33	-0.7
2,275,637	+		PFLU_RS10320	0.33	+1.2
2,275,637	+		PFLU_RS10320	0.33	+1.6
2,275,637	+		PFLU_RS10320	0.33	+1.7
2,275,638	-		PFLU_RS10320	0.33	+2.9
2,275,638	-		PFLU_RS10320	0.33	+1.2
2,275,911	+		PFLU_RS10320	0.68	+4.0
2,275,911	+		PFLU_RS10320	0.68	+1.8
2,275,911	+		PFLU_RS10320	0.68	+1.6
2,275,911	+		PFLU_RS10320	0.68	+1.1
2,275,911	+		PFLU_RS10320	0.68	+3.0
2,275,912	-		PFLU_RS10320	0.68	+2.5
2,275,912	-		PFLU_RS10320	0.68	+3.5
2,275,912	-		PFLU_RS10320	0.68	+1.5
2,275,912	-		PFLU_RS10320	0.68	+2.2
2,275,912	-		PFLU_RS10320	0.68	+2.3
2,275,912	-		PFLU_RS10320	0.68	+1.6
2,275,912	-		PFLU_RS10320	0.68	+1.1
2,275,912	-		PFLU_RS10320	0.68	+0.5
2,275,914	+		PFLU_RS10320	0.68	-0.1
2,275,914	+		PFLU_RS10320	0.68	+1.0
2,275,914	+		PFLU_RS10320	0.68	+0.7
2,275,914	+		PFLU_RS10320	0.68	+2.2
2,275,914	+		PFLU_RS10320	0.68	+0.5
2,275,914	+		PFLU_RS10320	0.68	+2.5
2,275,914	+		PFLU_RS10320	0.68	-0.1
2,275,915	-		PFLU_RS10320	0.69	+2.7
2,275,915	-		PFLU_RS10320	0.69	+0.2
2,275,915	-		PFLU_RS10320	0.69	+0.6
2,275,915	-		PFLU_RS10320	0.69	+1.3
2,275,915	-		PFLU_RS10320	0.69	+2.1
2,275,915	-		PFLU_RS10320	0.69	+1.5
2,275,915	-		PFLU_RS10320	0.69	+2.9
2,275,917	+		PFLU_RS10320	0.69	+1.1
2,275,918	-		PFLU_RS10320	0.69	+0.5
2,275,918	-		PFLU_RS10320	0.69	+0.5
2,275,918	-		PFLU_RS10320	0.69	+0.9
2,275,918	-		PFLU_RS10320	0.69	-1.3
2,275,918	-		PFLU_RS10320	0.69	+2.0
2,275,918	-		PFLU_RS10320	0.69	+0.5
2,275,980	+		PFLU_RS10320	0.77	+1.5
2,275,980	+		PFLU_RS10320	0.77	+0.9
2,275,980	+		PFLU_RS10320	0.77	+1.7
2,275,980	+		PFLU_RS10320	0.77	+2.7
2,275,980	+		PFLU_RS10320	0.77	+2.1
2,275,981	-		PFLU_RS10320	0.77	-0.1
2,275,981	-		PFLU_RS10320	0.77	+2.8
2,275,981	-		PFLU_RS10320	0.77	+1.0
2,275,981	-		PFLU_RS10320	0.77	+1.5
2,276,004	+		PFLU_RS10320	0.80	+1.3
2,276,004	+		PFLU_RS10320	0.80	+2.1
2,276,004	+		PFLU_RS10320	0.80	+0.7
2,276,005	-		PFLU_RS10320	0.80	+2.5
2,276,085	+				+1.3
2,276,085	+				+2.5
2,276,085	+				+0.7
2,276,085	+				-0.1
2,276,085	+				+0.9
2,276,086	-				+0.1
2,276,086	-				+1.6
2,276,106	+				+2.3
2,276,106	+				+1.9
2,276,106	+				+1.4
2,276,179	+				-2.4
2,276,179	+				-0.5
2,276,179	+				-3.0
2,276,179	+				+0.0
2,276,179	+				-2.5
2,276,179	+				-2.5
2,276,180	-				-1.6
2,276,180	-				-1.4
2,276,246	+				-3.2
2,276,246	+				-2.3
2,276,246	+				-2.2
2,276,246	+				-0.9
2,276,246	+				+0.2
2,276,246	+				-0.7
2,276,247	-				-0.1
2,276,247	-				-1.9
2,276,247	-				-1.9
2,276,247	-				-1.4
2,276,247	-				-3.8
2,276,247	-				-3.5
2,276,247	-				+1.2
2,276,250	+				-2.5
2,276,250	+				-1.3
2,276,250	+				-1.2
2,276,251	-				-1.9
2,276,251	-				-3.1
2,276,251	-				-1.1
2,276,251	-				-2.7
2,276,266	-				-2.4
2,276,316	+		PFLU_RS10325	0.12	-1.7
2,276,317	-		PFLU_RS10325	0.12	-0.4
2,276,317	-		PFLU_RS10325	0.12	-3.1