Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS17825

Experiment: butyrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	butyrate (C)
4,047,689	+		PFLU_RS17820	0.64	+0.9
4,047,689	+		PFLU_RS17820	0.64	-2.9
4,047,689	+		PFLU_RS17820	0.64	-0.8
4,047,689	+		PFLU_RS17820	0.64	+0.9
4,047,819	+		PFLU_RS17820	0.74	+0.7
4,047,819	+		PFLU_RS17820	0.74	+0.1
4,047,819	+		PFLU_RS17820	0.74	-1.0
4,047,907	-		PFLU_RS17820	0.81	-0.6
4,048,087	-				-0.3
4,048,128	+				-1.5
4,048,128	+				+0.2
4,048,128	+				+0.3
4,048,128	+				-0.7
4,048,128	+				-0.7
4,048,128	+				-0.4
4,048,128	+				+0.0
4,048,128	+				+0.9
4,048,128	+				+0.3
4,048,128	+				+1.3
4,048,128	+				-1.8
4,048,129	-				-0.7
4,048,129	-				+0.2
4,048,129	-				-0.4
4,048,129	-				+1.2
4,048,129	-				+1.8
4,048,129	-				+0.9
4,048,129	-				+1.8
4,048,129	-				+0.6
4,048,155	-				-1.1
4,048,155	-				-0.2
4,048,210	-				+0.2
4,048,308	-				-3.4
4,048,333	+				-0.7
4,048,334	-				+2.1
4,048,338	+				+0.9
4,048,338	+				-1.1
4,048,338	+				+2.4
4,048,338	+				+1.0
4,048,339	-				+0.4
4,048,404	-				-2.1
4,048,435	+				+0.6
4,048,454	-				+0.6
4,048,454	-				+1.1
4,048,457	-				-0.4
4,048,457	-				-1.1
4,048,583	+				-0.1
4,048,583	+				-0.3
4,048,628	-		PFLU_RS17825	0.15	-1.6
4,048,628	-		PFLU_RS17825	0.15	-0.9
4,048,628	-		PFLU_RS17825	0.15	-0.3
4,048,682	+		PFLU_RS17825	0.23	+2.5
4,048,725	-		PFLU_RS17825	0.29	-0.6
4,048,725	-		PFLU_RS17825	0.29	-0.3
4,048,728	-		PFLU_RS17825	0.29	-0.4
4,048,763	+		PFLU_RS17825	0.34	-2.3
4,048,763	+		PFLU_RS17825	0.34	-0.2
4,048,763	+		PFLU_RS17825	0.34	-1.9
4,048,763	+		PFLU_RS17825	0.34	-0.4
4,048,764	-		PFLU_RS17825	0.34	-0.7
4,048,764	-		PFLU_RS17825	0.34	+0.2
4,048,808	-		PFLU_RS17825	0.40	+0.3
4,048,808	-		PFLU_RS17825	0.40	-2.6
4,048,810	+		PFLU_RS17825	0.40	+0.1
4,048,810	+		PFLU_RS17825	0.40	-1.1
4,048,810	+		PFLU_RS17825	0.40	-1.1
4,048,811	-		PFLU_RS17825	0.40	-0.9
4,048,811	-		PFLU_RS17825	0.40	-2.6
4,048,811	-		PFLU_RS17825	0.40	-0.7
4,048,829	-		PFLU_RS17825	0.43	-0.5
4,048,829	-		PFLU_RS17825	0.43	-3.0
4,048,976	+		PFLU_RS17825	0.63	-1.7
4,048,976	+		PFLU_RS17825	0.63	-0.8
4,048,977	-		PFLU_RS17825	0.63	-0.1
4,048,977	-		PFLU_RS17825	0.63	+0.3
4,048,977	-		PFLU_RS17825	0.63	-0.1
4,049,071	+		PFLU_RS17825	0.76	-0.4
4,049,100	+		PFLU_RS17825	0.80	-0.7
4,049,101	-		PFLU_RS17825	0.80	+0.6
4,049,157	+		PFLU_RS17825	0.88	-0.4
4,049,181	-				-0.1
4,049,193	+				+2.0
4,049,193	+				+1.9
4,049,193	+				-0.3
4,049,193	+				-0.4
4,049,193	+				+0.6
4,049,194	-				+2.9
4,049,194	-				+1.6
4,049,195	+				-1.6
4,049,195	+				-2.0
4,049,195	+				-1.3
4,049,195	+				+0.3
4,049,195	+				-0.4
4,049,195	+				-1.9
4,049,195	+				+1.4
4,049,195	+				+0.9
4,049,196	-				-0.3
4,049,196	-				-2.3
4,049,196	-				+0.6
4,049,196	-				-2.3
4,049,242	+				-1.4
4,049,341	-		PFLU_RS17830	0.15	-0.1
4,049,378	+		PFLU_RS17830	0.20	+2.4
4,049,378	+		PFLU_RS17830	0.20	+0.9
4,049,378	+		PFLU_RS17830	0.20	+0.6
4,049,378	+		PFLU_RS17830	0.20	-0.3
4,049,378	+		PFLU_RS17830	0.20	-2.3
4,049,378	+		PFLU_RS17830	0.20	+0.9
4,049,378	+		PFLU_RS17830	0.20	+1.1
4,049,379	-		PFLU_RS17830	0.20	+0.0
4,049,379	-		PFLU_RS17830	0.20	+1.9
4,049,379	-		PFLU_RS17830	0.20	+1.2
4,049,379	-		PFLU_RS17830	0.20	+1.9
4,049,379	-		PFLU_RS17830	0.20	+0.6
4,049,379	-		PFLU_RS17830	0.20	-1.7
4,049,379	-		PFLU_RS17830	0.20	+1.4
4,049,380	+		PFLU_RS17830	0.21	+0.9
4,049,381	-		PFLU_RS17830	0.21	+2.7
4,049,381	-		PFLU_RS17830	0.21	+0.3
4,049,381	-		PFLU_RS17830	0.21	+1.3
4,049,381	-		PFLU_RS17830	0.21	-0.7
4,049,381	-		PFLU_RS17830	0.21	+0.6
4,049,381	-		PFLU_RS17830	0.21	+1.5
4,049,381	-		PFLU_RS17830	0.21	+0.9
4,049,392	-		PFLU_RS17830	0.22	+1.3
4,049,398	+		PFLU_RS17830	0.23	+0.2
4,049,399	-		PFLU_RS17830	0.23	+0.3
4,049,399	-		PFLU_RS17830	0.23	+0.9
4,049,399	-		PFLU_RS17830	0.23	-1.3
4,049,399	-		PFLU_RS17830	0.23	+1.3
4,049,400	+		PFLU_RS17830	0.23	-0.7
4,049,400	+		PFLU_RS17830	0.23	+0.5
4,049,400	+		PFLU_RS17830	0.23	+0.0
4,049,400	+		PFLU_RS17830	0.23	+2.3
4,049,400	+		PFLU_RS17830	0.23	+0.3
4,049,400	+		PFLU_RS17830	0.23	-1.4
4,049,400	+		PFLU_RS17830	0.23	+0.9
4,049,400	+		PFLU_RS17830	0.23	+2.3
4,049,400	+		PFLU_RS17830	0.23	+1.4
4,049,400	+		PFLU_RS17830	0.23	-1.4
4,049,400	+		PFLU_RS17830	0.23	+1.7
4,049,400	+		PFLU_RS17830	0.23	+0.1
4,049,400	+		PFLU_RS17830	0.23	-0.1
4,049,400	+		PFLU_RS17830	0.23	+1.4
4,049,400	+		PFLU_RS17830	0.23	+0.5
4,049,401	-		PFLU_RS17830	0.24	-1.1
4,049,401	-		PFLU_RS17830	0.24	-0.5
4,049,401	-		PFLU_RS17830	0.24	+1.2
4,049,401	-		PFLU_RS17830	0.24	-0.4
4,049,401	-		PFLU_RS17830	0.24	+0.1
4,049,401	-		PFLU_RS17830	0.24	+1.0
4,049,401	-		PFLU_RS17830	0.24	+1.3
4,049,401	-		PFLU_RS17830	0.24	-1.6
4,049,401	-		PFLU_RS17830	0.24	+2.0
4,049,401	-		PFLU_RS17830	0.24	+0.4
4,049,401	-		PFLU_RS17830	0.24	+0.9
4,049,401	-		PFLU_RS17830	0.24	-1.1
4,049,401	-		PFLU_RS17830	0.24	+1.9
4,049,401	-		PFLU_RS17830	0.24	+0.3
4,049,401	-		PFLU_RS17830	0.24	-2.4
4,049,406	+		PFLU_RS17830	0.24	+1.5
4,049,406	+		PFLU_RS17830	0.24	+0.3
4,049,406	+		PFLU_RS17830	0.24	-1.7
4,049,406	+		PFLU_RS17830	0.24	-2.1
4,049,406	+		PFLU_RS17830	0.24	-2.4
4,049,406	+		PFLU_RS17830	0.24	-0.5
4,049,407	-		PFLU_RS17830	0.24	+0.9
4,049,407	-		PFLU_RS17830	0.24	+0.1
4,049,440	+		PFLU_RS17830	0.29	+0.9
4,049,440	+		PFLU_RS17830	0.29	-1.7
4,049,440	+		PFLU_RS17830	0.29	-0.1
4,049,441	-		PFLU_RS17830	0.29	+1.5
4,049,441	-		PFLU_RS17830	0.29	+0.9
4,049,441	-		PFLU_RS17830	0.29	-1.5
4,049,441	-		PFLU_RS17830	0.29	-2.6
4,049,441	-		PFLU_RS17830	0.29	-0.7
4,049,610	+		PFLU_RS17830	0.54	+0.9
4,049,611	-		PFLU_RS17830	0.54	-0.3
4,049,611	-		PFLU_RS17830	0.54	-0.7
4,049,612	+		PFLU_RS17830	0.54	-0.3
4,049,613	-		PFLU_RS17830	0.54	-0.3
4,049,614	+		PFLU_RS17830	0.54	-0.7
4,049,615	-		PFLU_RS17830	0.54	+0.2
4,049,615	-		PFLU_RS17830	0.54	+0.1
4,049,615	-		PFLU_RS17830	0.54	-1.1
4,049,648	+		PFLU_RS17830	0.59	-2.1
4,049,657	+		PFLU_RS17830	0.60	+0.4
4,049,658	-		PFLU_RS17830	0.60	-0.3
4,049,668	+		PFLU_RS17830	0.62	-0.1
4,049,668	+		PFLU_RS17830	0.62	+2.2
4,049,668	+		PFLU_RS17830	0.62	+0.6
4,049,668	+		PFLU_RS17830	0.62	-1.1
4,049,668	+		PFLU_RS17830	0.62	+1.8
4,049,669	-		PFLU_RS17830	0.62	+1.5
4,049,669	-		PFLU_RS17830	0.62	-0.4
4,049,705	+		PFLU_RS17830	0.67	+0.1
4,049,705	+		PFLU_RS17830	0.67	-0.7
4,049,705	+		PFLU_RS17830	0.67	-0.6
4,049,705	+		PFLU_RS17830	0.67	-0.4
4,049,705	+		PFLU_RS17830	0.67	-0.4
4,049,706	-		PFLU_RS17830	0.67	-0.2
4,049,711	+		PFLU_RS17830	0.68	-2.4
4,049,711	+		PFLU_RS17830	0.68	-2.3
4,049,711	+		PFLU_RS17830	0.68	-0.1
4,049,711	+		PFLU_RS17830	0.68	-2.8
4,049,711	+		PFLU_RS17830	0.68	-0.7
4,049,711	+		PFLU_RS17830	0.68	-0.7
4,049,711	+		PFLU_RS17830	0.68	+2.5
4,049,711	+		PFLU_RS17830	0.68	-1.7
4,049,711	+		PFLU_RS17830	0.68	+1.9
4,049,712	-		PFLU_RS17830	0.68	-1.1
4,049,712	-		PFLU_RS17830	0.68	+0.9
4,049,712	-		PFLU_RS17830	0.68	-1.3
4,049,712	-		PFLU_RS17830	0.68	+1.1
4,049,712	-		PFLU_RS17830	0.68	+0.7
4,049,716	-		PFLU_RS17830	0.69	-1.3
4,049,716	-		PFLU_RS17830	0.69	+1.1
4,049,758	+		PFLU_RS17830	0.75	+0.3
4,049,786	+		PFLU_RS17830	0.79	-1.4
4,049,786	+		PFLU_RS17830	0.79	+1.6
4,049,787	-		PFLU_RS17830	0.79	+0.9
4,049,787	-		PFLU_RS17830	0.79	-1.2
4,049,812	+		PFLU_RS17830	0.83	+0.7
4,049,830	+		PFLU_RS17830	0.85	+0.7
4,049,831	-		PFLU_RS17830	0.85	-2.4
4,049,831	-		PFLU_RS17830	0.85	-0.4
4,049,892	-				-1.2
4,049,909	+				+0.9
4,049,909	+				-1.9
4,049,910	-				-0.1
4,049,910	-				-0.1
4,049,928	+				-0.3
4,049,928	+				+0.2
4,049,928	+				+2.1
4,049,928	+				+0.5
4,049,928	+				-0.6
4,049,928	+				+1.6
4,049,928	+				-1.4
4,049,928	+				+1.2
4,049,929	-				+0.3
4,049,929	-				-0.2
4,049,929	-				-0.5
4,049,929	-				-0.8
4,049,930	+				-1.3
4,049,931	-				-1.7
4,049,931	-				+0.2
4,049,931	-				-1.1
4,049,931	-				+0.1
4,049,947	+				+1.9
4,049,947	+				+0.9
4,049,947	+				+0.2
4,049,947	+				-1.4
4,049,948	-				-0.6
4,049,948	-				+0.8
4,049,964	-				+1.4
4,049,964	-				+0.1
4,049,964	-				-0.7
4,049,983	-				-2.1
4,050,051	+		PFLU_RS17835	0.13	+0.5
4,050,052	-		PFLU_RS17835	0.13	+0.1
4,050,058	+		PFLU_RS17835	0.14	-2.3
4,050,058	+		PFLU_RS17835	0.14	-0.2
4,050,058	+		PFLU_RS17835	0.14	+0.3
4,050,059	-		PFLU_RS17835	0.14	-2.2
4,050,100	+		PFLU_RS17835	0.21	-0.4
4,050,101	-		PFLU_RS17835	0.21	-0.3
4,050,146	+		PFLU_RS17835	0.28	+1.5
4,050,146	+		PFLU_RS17835	0.28	-2.3
4,050,146	+		PFLU_RS17835	0.28	-1.1
4,050,147	-		PFLU_RS17835	0.28	-0.3
4,050,147	-		PFLU_RS17835	0.28	-0.9
4,050,147	-		PFLU_RS17835	0.28	-2.6
4,050,147	-		PFLU_RS17835	0.28	+1.4
4,050,150	+		PFLU_RS17835	0.28	-1.4
4,050,150	+		PFLU_RS17835	0.28	-1.0
4,050,150	+		PFLU_RS17835	0.28	-0.1
4,050,150	+		PFLU_RS17835	0.28	-0.1
4,050,150	+		PFLU_RS17835	0.28	+3.0
4,050,150	+		PFLU_RS17835	0.28	-2.6
4,050,150	+		PFLU_RS17835	0.28	-0.4
4,050,150	+		PFLU_RS17835	0.28	-2.0
4,050,150	+		PFLU_RS17835	0.28	+0.8
4,050,150	+		PFLU_RS17835	0.28	-0.4
4,050,150	+		PFLU_RS17835	0.28	+0.9
4,050,151	-		PFLU_RS17835	0.28	-0.2
4,050,151	-		PFLU_RS17835	0.28	-0.1
4,050,151	-		PFLU_RS17835	0.28	+1.6
4,050,151	-		PFLU_RS17835	0.28	-0.8
4,050,151	-		PFLU_RS17835	0.28	+1.1
4,050,159	-		PFLU_RS17835	0.30	+0.8
4,050,165	-		PFLU_RS17835	0.30	+1.3
4,050,176	-		PFLU_RS17835	0.32	-0.4
4,050,191	+		PFLU_RS17835	0.34	-1.1
4,050,191	+		PFLU_RS17835	0.34	+0.9
4,050,191	+		PFLU_RS17835	0.34	+0.9
4,050,192	-		PFLU_RS17835	0.35	+0.8
4,050,192	-		PFLU_RS17835	0.35	-0.3
4,050,192	-		PFLU_RS17835	0.35	+0.5
4,050,192	-		PFLU_RS17835	0.35	-0.5