Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4193

Experiment: carbon source a1-Acid Glycoprotein from bovine plasma 10 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	carbon source a1-Acid Glycoprotein from bovine plasma 10 mg/ml
5,527,060	-				-4.1
5,527,078	+				-2.9
5,527,091	+				-2.6
5,527,095	+				-1.6
5,527,097	+				-2.2
5,527,181	-				-1.3
5,527,181	-				+0.1
5,527,181	-				+0.5
5,527,245	-		BT4192	0.14	-0.8
5,527,273	-		BT4192	0.17	+0.1
5,527,284	-		BT4192	0.19	-1.0
5,527,292	-		BT4192	0.20	-0.8
5,527,374	+		BT4192	0.29	-0.5
5,527,374	+		BT4192	0.29	-0.6
5,527,374	+		BT4192	0.29	-0.5
5,527,375	-		BT4192	0.29	-0.0
5,527,440	-		BT4192	0.37	-0.1
5,527,488	+		BT4192	0.43	-0.2
5,527,519	+		BT4192	0.46	-0.1
5,527,519	+		BT4192	0.46	-0.2
5,527,520	-		BT4192	0.46	-0.9
5,527,520	-		BT4192	0.46	-0.7
5,527,520	-		BT4192	0.46	-0.9
5,527,532	-		BT4192	0.48	+0.1
5,527,567	+		BT4192	0.52	-1.2
5,527,567	+		BT4192	0.52	-2.0
5,527,672	+		BT4192	0.64	-0.1
5,527,702	-		BT4192	0.68	-0.6
5,527,807	-		BT4192	0.80	-0.3
5,527,868	-		BT4192	0.87	-0.0
5,527,937	-				-0.5
5,528,014	-				-2.8
5,528,062	+				-3.9
5,528,064	+				-2.3
5,528,065	-				-2.6
5,528,065	-				-2.2
5,528,110	+				-1.5
5,528,151	-				-3.1
5,528,158	-				-0.9
5,528,216	-		BT4193	0.11	-1.7
5,528,259	-		BT4193	0.13	-1.5
5,528,260	+		BT4193	0.13	-2.5
5,528,262	+		BT4193	0.13	-2.3
5,528,262	+		BT4193	0.13	-0.7
5,528,262	+		BT4193	0.13	-2.3
5,528,262	+		BT4193	0.13	-0.5
5,528,263	-		BT4193	0.13	-2.1
5,528,263	-		BT4193	0.13	-1.2
5,528,264	+		BT4193	0.13	-1.8
5,528,265	-		BT4193	0.13	-1.9
5,528,265	-		BT4193	0.13	-1.2
5,528,305	-		BT4193	0.15	-2.8
5,528,339	+		BT4193	0.17	-1.7
5,528,339	+		BT4193	0.17	-2.6
5,528,339	+		BT4193	0.17	-3.0
5,528,356	+		BT4193	0.17	-3.9
5,528,382	-		BT4193	0.18	-3.0
5,528,388	-		BT4193	0.19	-1.7
5,528,423	-		BT4193	0.20	-0.5
5,528,529	+		BT4193	0.25	+0.1
5,528,530	-		BT4193	0.25	-2.6
5,528,557	+		BT4193	0.26	-0.9
5,528,558	-		BT4193	0.26	-0.2
5,528,558	-		BT4193	0.26	+0.3
5,528,688	+		BT4193	0.32	-1.5
5,528,785	-		BT4193	0.37	-1.5
5,528,817	+		BT4193	0.38	-3.1
5,528,817	+		BT4193	0.38	-2.1
5,528,817	+		BT4193	0.38	-1.5
5,528,818	-		BT4193	0.38	-1.7
5,528,822	+		BT4193	0.38	-0.5
5,528,823	-		BT4193	0.38	-0.9
5,528,885	+		BT4193	0.41	-3.1
5,528,930	+		BT4193	0.43	-1.2
5,529,077	-		BT4193	0.50	-2.2
5,529,169	+		BT4193	0.54	-2.7
5,529,169	+		BT4193	0.54	-3.5
5,529,173	-		BT4193	0.54	-1.5
5,529,266	+		BT4193	0.58	-2.3
5,529,314	-		BT4193	0.61	-2.2
5,529,314	-		BT4193	0.61	-0.9
5,529,374	+		BT4193	0.63	-1.6
5,529,374	+		BT4193	0.63	-1.2
5,529,375	-		BT4193	0.63	-1.7
5,529,378	+		BT4193	0.64	-1.5
5,529,421	+		BT4193	0.65	+0.5
5,529,427	+		BT4193	0.66	-0.9
5,529,456	-		BT4193	0.67	-2.6
5,529,539	+		BT4193	0.71	-2.5
5,529,539	+		BT4193	0.71	-0.9
5,529,539	+		BT4193	0.71	-3.4
5,529,590	-		BT4193	0.73	-1.9
5,529,590	-		BT4193	0.73	-3.3
5,529,591	+		BT4193	0.73	-1.1
5,529,684	+		BT4193	0.77	-2.9
5,529,789	-		BT4193	0.82	-1.5
5,529,818	-		BT4193	0.83	-2.2
5,529,819	+		BT4193	0.83	-0.7
5,529,820	-		BT4193	0.83	-4.2
5,529,820	-		BT4193	0.83	-1.2
5,529,821	+		BT4193	0.84	-0.8
5,529,838	+		BT4193	0.84	-2.2
5,529,907	+		BT4193	0.87	-0.5
5,529,907	+		BT4193	0.87	-1.2
5,529,908	-		BT4193	0.87	-0.2
5,530,167	+				-0.5
5,530,271	-				+0.0
5,530,293	-				-0.9
5,530,301	-				-1.2
5,530,363	+				+1.1
5,530,363	+				+0.5
5,530,364	-				+0.1
5,530,490	-				-0.2
5,530,616	-		BT4194	0.17	-0.5
5,530,666	+		BT4194	0.22	-1.1
5,530,671	+		BT4194	0.23	-0.2
5,530,732	+		BT4194	0.29	-0.3
5,530,733	-		BT4194	0.29	+0.0
5,530,799	-		BT4194	0.36	+0.4
5,530,822	-		BT4194	0.39	-0.9
5,530,856	+		BT4194	0.42	-0.0
5,530,857	-		BT4194	0.43	-1.8
5,530,900	+		BT4194	0.47	-0.5
5,531,071	+		BT4194	0.65	+0.1
5,531,128	-		BT4194	0.71	+0.3
5,531,141	-		BT4194	0.72	+0.2
5,531,143	+		BT4194	0.73	-0.6
5,531,143	+		BT4194	0.73	-1.0
5,531,144	-		BT4194	0.73	+0.4