Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3085

Experiment: carbon source a1-Acid Glycoprotein from bovine plasma 10 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	carbon source a1-Acid Glycoprotein from bovine plasma 10 mg/ml
3,910,213	+		BT3084	0.39	+0.2
3,910,214	-		BT3084	0.40	-0.7
3,910,214	-		BT3084	0.40	-0.6
3,910,214	-		BT3084	0.40	-1.6
3,910,218	+		BT3084	0.40	+0.8
3,910,247	+		BT3084	0.44	-1.1
3,910,248	-		BT3084	0.44	-0.2
3,910,311	+		BT3084	0.51	-0.1
3,910,312	-		BT3084	0.51	+0.5
3,910,381	+		BT3084	0.60	-0.7
3,910,381	+		BT3084	0.60	+0.6
3,910,382	-		BT3084	0.60	-0.0
3,910,382	-		BT3084	0.60	-1.4
3,910,383	+		BT3084	0.60	+0.1
3,910,383	+		BT3084	0.60	-0.7
3,910,384	-				-1.0
3,910,386	-		BT3084	0.60	-0.2
3,910,422	+		BT3084	0.65	-1.0
3,910,507	+		BT3084	0.75	-0.1
3,910,545	-		BT3084	0.80	-0.1
3,910,575	-		BT3084	0.83	-0.5
3,910,575	-		BT3084	0.83	-0.8
3,910,601	+		BT3084	0.87	-0.1
3,910,606	+		BT3084	0.87	-1.1
3,910,606	+		BT3084	0.87	+1.9
3,910,607	-		BT3084	0.87	-0.1
3,910,625	+		BT3084	0.90	-0.9
3,910,629	+				+0.3
3,910,697	-				-1.6
3,910,698	+				-0.1
3,910,731	-				+0.1
3,910,769	+				-0.9
3,910,773	-				-0.5
3,910,775	+				-0.7
3,910,776	-				-0.7
3,910,776	-				+0.5
3,910,794	+				-0.9
3,910,794	+				-0.4
3,910,797	+				+0.7
3,910,798	-				-0.1
3,910,798	-				-1.8
3,910,799	+				-0.8
3,910,799	+				-0.2
3,910,819	+				+0.2
3,910,820	-				-0.7
3,910,836	-				-1.4
3,910,841	+				-0.0
3,910,841	+				+1.5
3,910,862	+				-0.4
3,910,923	+				+0.6
3,910,928	+				-0.6
3,910,934	-				-0.5
3,910,948	-				-0.9
3,910,952	+				-1.9
3,910,967	-				-2.5
3,910,993	+				-0.1
3,910,993	+				-0.5
3,910,994	-				-1.2
3,910,994	-				-1.4
3,910,994	-				-2.8
3,911,123	+				-0.9
3,911,176	+		BT3085	0.10	-0.9
3,911,233	+		BT3085	0.13	-0.1
3,911,327	+		BT3085	0.17	-0.8
3,911,349	+		BT3085	0.18	-0.6
3,911,349	+		BT3085	0.18	-0.4
3,911,357	+		BT3085	0.19	-0.6
3,911,372	+		BT3085	0.19	+0.2
3,911,394	+		BT3085	0.20	-1.9
3,911,435	+		BT3085	0.22	-1.3
3,911,493	+		BT3085	0.25	-0.1
3,911,496	-		BT3085	0.25	-0.5
3,911,516	+		BT3085	0.26	-0.7
3,911,516	+		BT3085	0.26	-0.9
3,911,561	+		BT3085	0.28	-0.8
3,911,601	+		BT3085	0.30	-0.1
3,911,602	-		BT3085	0.30	-2.4
3,911,659	-		BT3085	0.33	-0.6
3,911,860	+		BT3085	0.42	-0.6
3,911,880	+		BT3085	0.43	-0.2
3,911,880	+		BT3085	0.43	-1.9
3,911,941	+		BT3085	0.46	-0.8
3,912,016	+		BT3085	0.50	-0.4
3,912,017	-		BT3085	0.50	-0.1
3,912,068	-		BT3085	0.52	-1.4
3,912,162	+		BT3085	0.56	-0.1
3,912,182	+		BT3085	0.57	-1.0
3,912,182	+		BT3085	0.57	-0.9
3,912,234	-		BT3085	0.60	-1.0
3,912,264	+		BT3085	0.61	-0.0
3,912,273	-		BT3085	0.62	-1.4
3,912,276	+		BT3085	0.62	-0.6
3,912,276	+		BT3085	0.62	-1.0
3,912,276	+		BT3085	0.62	-0.8
3,912,292	-		BT3085	0.62	+0.6
3,912,430	-		BT3085	0.69	-2.4
3,912,430	-		BT3085	0.69	-0.5
3,912,507	+		BT3085	0.73	-0.9
3,912,508	-		BT3085	0.73	-0.6
3,912,517	-		BT3085	0.73	-0.9
3,912,533	+		BT3085	0.74	-1.1
3,912,577	-		BT3085	0.76	-0.4
3,912,586	-		BT3085	0.76	-0.9
3,912,586	-		BT3085	0.76	-0.8
3,912,586	-		BT3085	0.76	-0.0
3,912,586	-		BT3085	0.76	+0.2
3,912,654	-		BT3085	0.79	+0.2
3,912,654	-		BT3085	0.79	+0.1
3,912,666	+		BT3085	0.80	-0.9
3,912,667	-		BT3085	0.80	-0.6
3,912,667	-		BT3085	0.80	-0.9
3,912,668	+		BT3085	0.80	-0.3
3,912,668	+		BT3085	0.80	-0.1
3,912,669	-		BT3085	0.80	-0.7
3,912,700	+		BT3085	0.82	-1.2
3,912,703	-		BT3085	0.82	-0.8
3,912,703	-		BT3085	0.82	+0.2
3,912,730	-		BT3085	0.83	-0.9
3,912,751	-		BT3085	0.84	+0.1
3,912,751	-		BT3085	0.84	-1.4
3,912,751	-		BT3085	0.84	-0.8
3,912,751	-		BT3085	0.84	-0.6
3,912,793	-		BT3085	0.86	-2.0
3,912,828	+		BT3085	0.88	+0.5
3,912,828	+		BT3085	0.88	-0.2
3,912,828	+		BT3085	0.88	-2.5
3,912,828	+		BT3085	0.88	-0.5
3,912,828	+		BT3085	0.88	-1.3
3,912,829	-		BT3085	0.88	-1.4
3,912,829	-		BT3085	0.88	+0.1
3,912,848	-		BT3085	0.88	-1.4
3,912,877	+		BT3085	0.90	-0.3
3,912,877	+		BT3085	0.90	-0.9
3,912,961	+				+0.1
3,912,962	-				-0.4
3,912,962	-				-0.6
3,912,997	+				-0.6
3,913,047	+				-0.1
3,913,062	+				-0.7
3,913,063	-				-1.1
3,913,063	-				-1.4
3,913,100	+				-1.2
3,913,104	+				-0.9
3,913,124	-				-0.7
3,913,244	+				+0.3
3,913,266	-				-1.1
3,913,351	-				+0.7
3,913,414	+				-0.3
3,913,415	-				-0.3
3,913,415	-				-0.8
3,913,419	-				-1.0
3,913,507	-				+0.6
3,913,580	-				-0.5
3,913,629	+				-1.2
3,913,630	-				+0.3
3,913,664	+				-0.6
3,913,664	+				-1.1
3,913,826	-		BT3086	0.16	-0.3
3,913,845	-		BT3086	0.16	-0.7
3,913,865	+		BT3086	0.17	-0.3
3,913,866	-		BT3086	0.17	-0.6
3,913,866	-		BT3086	0.17	+0.4
3,913,944	+		BT3086	0.20	-0.1
3,913,970	+		BT3086	0.21	-1.6
3,914,026	-		BT3086	0.24	-0.8