Experiment: carbon source a1-Acid Glycoprotein from bovine plasma 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0053 and BT0054 are separated by 52 nucleotides BT0054 and BT0055 are separated by 7 nucleotides
BT0053: BT0053 - glycosyltransferase (NCBI ptt file), at 48,834 to 49,958
BT0053
BT0054: BT0054 - putative glycosyltransferase (NCBI ptt file), at 50,011 to 51,132
BT0054
BT0055: BT0055 - putative glycosyltransferase (NCBI ptt file), at 51,140 to 52,255
BT0055
Position (kb) 50
51
52 Strain fitness (log2 ratio) -2
-1
0
1 at 49.021 kb on - strand, within BT0053 at 49.053 kb on - strand, within BT0053 at 49.088 kb on + strand, within BT0053 at 49.109 kb on - strand, within BT0053 at 49.134 kb on - strand, within BT0053 at 49.134 kb on - strand, within BT0053 at 49.348 kb on - strand, within BT0053 at 49.533 kb on - strand, within BT0053 at 49.609 kb on + strand, within BT0053 at 49.692 kb on - strand, within BT0053 at 49.728 kb on - strand, within BT0053 at 49.838 kb on - strand, within BT0053 at 49.878 kb on - strand at 49.963 kb on - strand at 50.003 kb on - strand at 50.099 kb on - strand at 50.115 kb on - strand at 50.139 kb on - strand, within BT0054 at 50.147 kb on + strand, within BT0054 at 50.188 kb on - strand, within BT0054 at 50.188 kb on - strand, within BT0054 at 50.240 kb on - strand, within BT0054 at 50.242 kb on - strand, within BT0054 at 50.242 kb on - strand, within BT0054 at 50.243 kb on + strand, within BT0054 at 50.243 kb on + strand, within BT0054 at 50.286 kb on - strand, within BT0054 at 50.412 kb on - strand, within BT0054 at 50.467 kb on - strand, within BT0054 at 50.467 kb on - strand, within BT0054 at 50.471 kb on + strand, within BT0054 at 50.472 kb on - strand, within BT0054 at 50.472 kb on - strand, within BT0054 at 50.475 kb on - strand, within BT0054 at 50.475 kb on - strand, within BT0054 at 50.540 kb on + strand, within BT0054 at 50.541 kb on - strand, within BT0054 at 50.557 kb on - strand, within BT0054 at 50.609 kb on + strand, within BT0054 at 50.648 kb on + strand, within BT0054 at 50.794 kb on + strand, within BT0054 at 50.797 kb on - strand, within BT0054 at 50.797 kb on - strand, within BT0054 at 50.802 kb on + strand, within BT0054 at 50.816 kb on - strand, within BT0054 at 50.825 kb on - strand, within BT0054 at 50.846 kb on + strand, within BT0054 at 50.943 kb on + strand, within BT0054 at 50.944 kb on - strand, within BT0054 at 50.971 kb on + strand, within BT0054 at 51.036 kb on + strand at 51.037 kb on - strand at 51.080 kb on - strand at 51.080 kb on - strand at 51.080 kb on - strand at 51.168 kb on - strand at 51.211 kb on - strand at 51.217 kb on + strand at 51.355 kb on - strand, within BT0055 at 51.490 kb on - strand, within BT0055 at 51.490 kb on - strand, within BT0055 at 51.532 kb on + strand, within BT0055 at 51.580 kb on - strand, within BT0055 at 51.582 kb on - strand, within BT0055 at 51.586 kb on - strand, within BT0055 at 51.714 kb on + strand, within BT0055 at 51.715 kb on - strand, within BT0055 at 51.715 kb on - strand, within BT0055 at 51.792 kb on - strand, within BT0055 at 51.792 kb on - strand at 51.825 kb on - strand, within BT0055 at 52.027 kb on - strand, within BT0055 at 52.027 kb on - strand, within BT0055
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source a1-Acid Glycoprotein from bovine plasma 10 mg/ml remove 49,021 - BT0053 0.17 -1.4 49,053 - BT0053 0.19 -0.7 49,088 + BT0053 0.23 +0.5 49,109 - BT0053 0.24 +0.6 49,134 - BT0053 0.27 -1.1 49,134 - BT0053 0.27 +0.6 49,348 - BT0053 0.46 +0.4 49,533 - BT0053 0.62 +0.9 49,609 + BT0053 0.69 +0.1 49,692 - BT0053 0.76 -0.1 49,728 - BT0053 0.79 -0.9 49,838 - BT0053 0.89 +0.1 49,878 - +0.0 49,963 - -1.1 50,003 - -1.9 50,099 - -0.3 50,115 - -0.2 50,139 - BT0054 0.11 +0.6 50,147 + BT0054 0.12 +0.1 50,188 - BT0054 0.16 +0.2 50,188 - BT0054 0.16 +0.1 50,240 - BT0054 0.20 -2.1 50,242 - BT0054 0.21 -0.1 50,242 - BT0054 0.21 -0.9 50,243 + BT0054 0.21 -0.4 50,243 + BT0054 0.21 -0.0 50,286 - BT0054 0.25 +0.2 50,412 - BT0054 0.36 -0.7 50,467 - BT0054 0.41 -0.7 50,467 - BT0054 0.41 -0.7 50,471 + BT0054 0.41 -0.9 50,472 - BT0054 0.41 -0.1 50,472 - BT0054 0.41 +0.2 50,475 - BT0054 0.41 +0.2 50,475 - BT0054 0.41 -0.6 50,540 + BT0054 0.47 +0.6 50,541 - BT0054 0.47 -0.2 50,557 - BT0054 0.49 -0.2 50,609 + BT0054 0.53 -1.6 50,648 + BT0054 0.57 -1.6 50,794 + BT0054 0.70 -0.4 50,797 - BT0054 0.70 -0.6 50,797 - BT0054 0.70 -0.1 50,802 + BT0054 0.70 +0.0 50,816 - BT0054 0.72 +0.1 50,825 - BT0054 0.73 -0.7 50,846 + BT0054 0.74 -0.9 50,943 + BT0054 0.83 -0.1 50,944 - BT0054 0.83 +0.3 50,971 + BT0054 0.86 -0.1 51,036 + -1.8 51,037 - -2.5 51,080 - -0.7 51,080 - -1.1 51,080 - -0.3 51,168 - -0.8 51,211 - +0.2 51,217 + -0.6 51,355 - BT0055 0.19 -0.2 51,490 - BT0055 0.31 -1.2 51,490 - BT0055 0.31 -1.5 51,532 + BT0055 0.35 +0.6 51,580 - BT0055 0.39 -0.6 51,582 - BT0055 0.40 +0.4 51,586 - BT0055 0.40 -0.7 51,714 + BT0055 0.51 -1.7 51,715 - BT0055 0.52 -0.5 51,715 - BT0055 0.52 +0.1 51,792 - BT0055 0.58 +0.1 51,792 - +0.9 51,825 - BT0055 0.61 +1.3 52,027 - BT0055 0.79 -0.7 52,027 - BT0055 0.79 +0.1
Or see this region's nucleotide sequence