Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4115

Experiment: carbon source (+)-Arabinogalactan, Larch wood 10 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	carbon source (+)-Arabinogalactan, Larch wood 10 mg/ml
5,387,237	-		BT4114	0.77	-0.4
5,387,243	+		BT4114	0.77	+0.6
5,387,246	-		BT4114	0.77	-0.6
5,387,246	-		BT4114	0.77	-1.1
5,387,320	+		BT4114	0.80	-0.6
5,387,320	+		BT4114	0.80	-0.4
5,387,320	+		BT4114	0.80	+0.1
5,387,320	+		BT4114	0.80	+0.8
5,387,320	+		BT4114	0.80	+1.3
5,387,325	-		BT4114	0.80	-0.8
5,387,330	+		BT4114	0.80	+0.8
5,387,331	-		BT4114	0.80	-0.5
5,387,357	+		BT4114	0.81	-0.2
5,387,357	+		BT4114	0.81	-1.3
5,387,390	+		BT4114	0.82	-0.1
5,387,390	+		BT4114	0.82	+0.0
5,387,421	+		BT4114	0.83	-1.0
5,387,422	-		BT4114	0.83	+0.5
5,387,444	+		BT4114	0.84	+0.9
5,387,511	+		BT4114	0.86	+0.5
5,387,512	-		BT4114	0.86	-0.8
5,387,562	+		BT4114	0.87	+1.1
5,387,563	-		BT4114	0.87	-0.1
5,387,583	-		BT4114	0.88	+0.2
5,387,624	+		BT4114	0.89	-0.2
5,387,673	+				-0.2
5,387,678	+				-0.3
5,387,679	-				+0.4
5,387,734	+				-0.5
5,387,745	+				-0.2
5,387,746	-				+0.1
5,387,801	+				-0.1
5,387,914	-				+0.0
5,387,993	-				-0.8
5,387,995	+				-2.6
5,387,996	-				+0.9
5,388,070	+				-0.1
5,388,143	+				+0.4
5,388,144	-				-1.0
5,388,238	+				+0.2
5,388,239	-				-0.3
5,388,239	-				-0.7
5,388,257	-				+0.3
5,388,263	+				-0.4
5,388,274	+				+0.1
5,388,275	-				+0.0
5,388,377	+		BT4115	0.13	-0.4
5,388,402	+		BT4115	0.14	+0.0
5,388,403	-		BT4115	0.14	-0.4
5,388,531	+		BT4115	0.23	-0.4
5,388,569	+		BT4115	0.25	-0.2
5,388,581	+		BT4115	0.26	-1.0
5,388,650	+		BT4115	0.31	+0.5
5,388,830	-		BT4115	0.43	+0.1
5,388,842	+		BT4115	0.44	-1.0
5,388,887	-		BT4115	0.47	-1.6
5,388,910	+		BT4115	0.48	+0.4
5,388,921	-		BT4115	0.49	-0.3
5,388,961	+		BT4115	0.52	+0.0
5,389,054	+		BT4115	0.58	-1.3
5,389,055	-		BT4115	0.58	-0.7
5,389,079	+		BT4115	0.60	-0.8
5,389,079	+		BT4115	0.60	+0.1
5,389,160	+		BT4115	0.65	-0.1
5,389,192	-		BT4115	0.67	-0.3
5,389,211	+		BT4115	0.68	+0.5
5,389,501	+		BT4115	0.88	-0.2
5,389,501	+				-1.2
5,389,501	+		BT4115	0.88	-0.5
5,389,502	-		BT4115	0.88	+0.6
5,389,502	-		BT4115	0.88	-0.2
5,389,503	+		BT4115	0.88	-0.5
5,389,503	+		BT4115	0.88	+1.2
5,389,503	+		BT4115	0.88	-0.7
5,389,531	+		BT4115	0.90	+0.0
5,389,531	+		BT4115	0.90	-1.3
5,389,600	+				-0.4
5,389,644	-				-0.2
5,389,644	-				-0.2
5,389,648	-				-2.1
5,389,682	+				-1.1
5,389,686	+				-0.7
5,389,686	+				-0.1
5,389,687	-				-0.2
5,389,690	+				-1.2
5,389,691	-				-1.2
5,389,749	-				+0.2
5,389,749	-				-0.9
5,389,750	+				-1.4
5,389,751	-				-1.4
5,389,751	-				-1.2
5,389,761	+				+0.5
5,389,876	+		BT4116	0.12	-1.1
5,389,945	+		BT4116	0.16	-0.4
5,390,076	+		BT4116	0.25	-0.2
5,390,077	-		BT4116	0.25	-0.2
5,390,159	+		BT4116	0.30	+0.0
5,390,159	+		BT4116	0.30	+0.2
5,390,160	-		BT4116	0.30	-0.5
5,390,198	+		BT4116	0.32	+1.0
5,390,202	+		BT4116	0.33	-1.4
5,390,252	-		BT4116	0.36	-0.8
5,390,253	+		BT4116	0.36	+0.1
5,390,254	-		BT4116	0.36	-0.1
5,390,286	+		BT4116	0.38	-1.7
5,390,291	-		BT4116	0.38	+0.4
5,390,303	+		BT4116	0.39	+0.5
5,390,347	+		BT4116	0.42	-1.9
5,390,350	+		BT4116	0.42	-1.5
5,390,355	-		BT4116	0.42	-0.4
5,390,355	-		BT4116	0.42	-0.5
5,390,368	+		BT4116	0.43	-0.1
5,390,369	-		BT4116	0.43	-0.6
5,390,412	-		BT4116	0.46	-1.1
5,390,412	-		BT4116	0.46	-1.6
5,390,418	+		BT4116	0.46	+1.0
5,390,418	+		BT4116	0.46	+0.7
5,390,418	+		BT4116	0.46	+0.8
5,390,419	-		BT4116	0.46	-1.4
5,390,423	-		BT4116	0.47	-0.3
5,390,430	+		BT4116	0.47	+0.3
5,390,498	+		BT4116	0.51	-0.4
5,390,498	+		BT4116	0.51	+0.4
5,390,618	-		BT4116	0.59	-0.6
5,390,634	-		BT4116	0.60	+0.6
5,390,664	-		BT4116	0.62	-0.9