Experiment: carbon source (+)-Arabinogalactan, Larch wood 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0413 and BT0414 are separated by 20 nucleotides BT0414 and BT0415 are separated by 39 nucleotides BT0415 and BT0416 are separated by 11 nucleotides
BT0413: BT0413 - putative adenylylsulfate kinase (NCBI ptt file), at 499,518 to 500,123
BT0413
BT0414: BT0414 - sulfate adenylyltransferase subunit 2 (NCBI ptt file), at 500,144 to 501,052
BT0414
BT0415: BT0415 - sulfate adenylyltransferase subunit 1/adenylylsulfate kinase (NCBI ptt file), at 501,092 to 502,549
BT0415
BT0416: BT0416 - conserved hypothetical protein (NCBI ptt file), at 502,561 to 503,667
BT0416
Position (kb) 501
502
503 Strain fitness (log2 ratio) -1
0
1
2 at 500.330 kb on - strand, within BT0414 at 500.417 kb on - strand, within BT0414 at 500.474 kb on - strand, within BT0414 at 500.732 kb on + strand, within BT0414 at 500.807 kb on - strand, within BT0414 at 500.809 kb on + strand, within BT0414 at 500.810 kb on - strand, within BT0414 at 501.110 kb on - strand at 501.294 kb on + strand, within BT0415 at 501.300 kb on - strand, within BT0415 at 501.300 kb on - strand, within BT0415 at 501.347 kb on - strand, within BT0415 at 501.369 kb on - strand, within BT0415 at 501.369 kb on - strand, within BT0415 at 501.427 kb on + strand, within BT0415 at 501.428 kb on - strand, within BT0415 at 501.531 kb on + strand, within BT0415 at 501.618 kb on + strand, within BT0415 at 501.710 kb on - strand, within BT0415 at 501.818 kb on + strand, within BT0415 at 501.892 kb on + strand, within BT0415 at 501.892 kb on + strand, within BT0415 at 502.596 kb on + strand at 502.664 kb on - strand at 502.813 kb on - strand, within BT0416 at 502.813 kb on - strand, within BT0416 at 502.924 kb on - strand, within BT0416 at 502.962 kb on + strand, within BT0416 at 503.023 kb on + strand, within BT0416 at 503.032 kb on + strand, within BT0416 at 503.034 kb on + strand, within BT0416 at 503.068 kb on + strand, within BT0416 at 503.314 kb on - strand, within BT0416 at 503.397 kb on + strand, within BT0416 at 503.397 kb on + strand, within BT0416 at 503.402 kb on - strand, within BT0416 at 503.494 kb on - strand, within BT0416 at 503.500 kb on - strand, within BT0416
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source (+)-Arabinogalactan, Larch wood 10 mg/ml remove 500,330 - BT0414 0.20 -0.3 500,417 - BT0414 0.30 -0.1 500,474 - BT0414 0.36 +0.0 500,732 + BT0414 0.65 +0.1 500,807 - BT0414 0.73 +1.5 500,809 + BT0414 0.73 -1.1 500,810 - BT0414 0.73 +0.5 501,110 - +0.0 501,294 + BT0415 0.14 -0.3 501,300 - BT0415 0.14 +0.1 501,300 - BT0415 0.14 +0.4 501,347 - BT0415 0.17 -0.3 501,369 - BT0415 0.19 -0.7 501,369 - BT0415 0.19 -0.5 501,427 + BT0415 0.23 +0.7 501,428 - BT0415 0.23 -0.1 501,531 + BT0415 0.30 -0.8 501,618 + BT0415 0.36 -0.5 501,710 - BT0415 0.42 -0.4 501,818 + BT0415 0.50 -0.6 501,892 + BT0415 0.55 -0.5 501,892 + BT0415 0.55 +0.1 502,596 + -1.5 502,664 - +1.9 502,813 - BT0416 0.23 -0.0 502,813 - BT0416 0.23 -0.7 502,924 - BT0416 0.33 -0.2 502,962 + BT0416 0.36 +1.6 503,023 + BT0416 0.42 +1.1 503,032 + BT0416 0.43 -0.7 503,034 + BT0416 0.43 +0.2 503,068 + BT0416 0.46 -0.3 503,314 - BT0416 0.68 -0.5 503,397 + BT0416 0.76 +1.5 503,397 + BT0416 0.76 -0.4 503,402 - BT0416 0.76 +0.2 503,494 - BT0416 0.84 -0.1 503,500 - BT0416 0.85 +0.0
Or see this region's nucleotide sequence