Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2617

Experiment: carbon source Mucin from porcine stomach type III 10 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	carbon source Mucin from porcine stomach type III 10 mg/ml
3,255,791	-		BT2615	0.74	-0.3
3,255,818	+		BT2615	0.76	+0.3
3,255,840	+		BT2615	0.78	-1.9
3,255,894	-		BT2615	0.82	-0.4
3,255,975	-		BT2615	0.89	-0.9
3,256,095	+				+0.3
3,256,127	+				-0.8
3,256,144	+				+0.0
3,256,203	+				-1.9
3,256,204	-				-0.5
3,256,208	+				-0.4
3,256,211	+				-1.6
3,256,233	-				-0.1
3,256,234	+				-0.1
3,256,235	-				-0.7
3,256,293	+				-0.2
3,256,295	+				-0.2
3,256,295	+				+0.0
3,256,317	+				-0.8
3,256,317	+				-1.0
3,256,318	-				+0.1
3,256,371	-				+0.1
3,256,371	-				-0.7
3,256,431	+				-0.0
3,256,431	+				-0.5
3,256,432	-				-0.3
3,256,480	-		BT2616	0.13	-0.7
3,256,483	-		BT2616	0.14	-0.1
3,256,483	-		BT2616	0.14	-0.8
3,256,487	+		BT2616	0.15	+0.5
3,256,488	-		BT2616	0.16	-0.7
3,256,518	+		BT2616	0.26	-0.6
3,256,555	+		BT2616	0.40	-0.6
3,256,555	+		BT2616	0.40	+1.0
3,256,601	-		BT2616	0.57	+0.3
3,256,674	-		BT2616	0.83	-0.0
3,256,697	+				-0.9
3,256,739	+				-0.0
3,256,740	-				-0.6
3,256,781	-				+0.8
3,256,784	-				-0.9
3,256,784	-				-0.1
3,256,835	+				-1.0
3,256,835	+				+0.4
3,256,836	-				-0.1
3,256,877	-		BT2617	0.13	-0.4
3,256,912	-		BT2617	0.15	+0.4
3,256,924	-		BT2617	0.16	-0.7
3,256,953	+		BT2617	0.18	+0.7
3,256,985	+		BT2617	0.21	+0.5
3,256,986	-		BT2617	0.21	-1.1
3,257,006	+		BT2617	0.22	+0.3
3,257,006	+		BT2617	0.22	-1.5
3,257,107	+		BT2617	0.29	-0.6
3,257,108	-		BT2617	0.29	+0.1
3,257,113	+		BT2617	0.30	-0.5
3,257,138	+		BT2617	0.31	-0.2
3,257,161	+		BT2617	0.33	-0.2
3,257,174	+		BT2617	0.34	-1.3
3,257,175	-		BT2617	0.34	+0.8
3,257,179	+		BT2617	0.34	-0.3
3,257,224	+		BT2617	0.38	-0.7
3,257,225	-		BT2617	0.38	+0.1
3,257,236	+		BT2617	0.38	-0.0
3,257,281	+		BT2617	0.42	-0.3
3,257,282	-		BT2617	0.42	+0.6
3,257,359	-		BT2617	0.47	-1.1
3,257,365	+		BT2617	0.48	-0.6
3,257,450	+		BT2617	0.54	-0.3
3,257,459	-		BT2617	0.54	-0.3
3,257,471	-		BT2617	0.55	-1.5
3,257,484	-		BT2617	0.56	-0.9
3,257,486	-		BT2617	0.56	+0.4
3,257,500	+		BT2617	0.57	-0.2
3,257,500	+		BT2617	0.57	-0.9
3,257,517	+		BT2617	0.58	-2.4
3,257,560	+		BT2617	0.61	+0.1
3,257,564	+		BT2617	0.62	-0.4
3,257,564	+		BT2617	0.62	-1.1
3,257,566	+		BT2617	0.62	-0.7
3,257,566	+		BT2617	0.62	-1.6
3,257,567	-		BT2617	0.62	-0.3
3,257,567	-		BT2617	0.62	+0.1
3,257,567	-		BT2617	0.62	-2.6
3,257,568	+		BT2617	0.62	-0.2
3,257,568	+		BT2617	0.62	+0.3
3,257,568	+		BT2617	0.62	+1.1
3,257,569	-		BT2617	0.62	-0.3
3,257,569	-		BT2617	0.62	-0.6
3,257,569	-		BT2617	0.62	+0.2
3,257,570	+		BT2617	0.62	-0.5
3,257,571	-		BT2617	0.62	+0.2
3,257,571	-		BT2617	0.62	+0.5
3,257,667	-		BT2617	0.69	-0.0
3,257,667	-		BT2617	0.69	-0.7
3,257,761	+		BT2617	0.76	+0.2
3,257,815	+		BT2617	0.80	-0.3
3,257,839	+		BT2617	0.81	-0.4
3,257,852	-		BT2617	0.82	-0.7
3,257,852	-		BT2617	0.82	-0.3
3,257,852	-		BT2617	0.82	-0.6
3,257,912	+		BT2617	0.86	-1.9
3,257,937	+		BT2617	0.88	+0.3
3,257,938	-		BT2617	0.88	+0.4
3,257,953	+		BT2617	0.89	-0.4
3,257,975	-				-0.2
3,258,045	+				-1.5
3,258,128	+				-0.2
3,258,173	-				-0.8
3,258,175	+				-1.2
3,258,176	-				-0.5
3,258,240	+				+0.4
3,258,269	+				-0.5
3,258,270	-				-1.2
3,258,285	+				+0.0
3,258,286	-				-1.2
3,258,319	+				-0.2
3,258,319	+				-1.1
3,258,324	-				-1.8
3,258,324	-				+0.2
3,258,324	-				-0.9
3,258,326	-				-0.6
3,258,370	+				-0.6
3,258,370	+				+0.2
3,258,371	-				+0.3
3,258,371	-				+0.4
3,258,372	+				-0.6
3,258,373	-				-0.3
3,258,399	+				-0.5
3,258,449	+				+0.2
3,258,449	+				-0.9
3,258,458	+				+0.8
3,258,458	+				+0.4
3,258,459	-				+0.6
3,258,504	+				-1.2
3,258,504	+				-1.0
3,258,505	-				+0.2
3,258,505	-				-0.1
3,258,530	+				-0.7
3,258,556	+				-0.0
3,258,577	+				-0.1
3,258,583	-				-0.3
3,258,600	+				-0.5
3,258,600	+				+0.3
3,258,678	-				-0.4
3,258,800	-		BT2618	0.18	-0.7
3,258,933	+		BT2618	0.28	+0.1