Experiment: carbon source Mucin from porcine stomach type III 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT4107 and BT4108 are separated by 302 nucleotides BT4108 and BT4109 are separated by 9 nucleotides
BT4107: BT4107 - putative phosphotransferase enzyme II, C component (NCBI ptt file), at 5,370,014 to 5,371,411
BT4107
BT4108: BT4108 - conserved hypothetical protein (NCBI ptt file), at 5,371,714 to 5,372,913
BT4108
BT4109: BT4109 - putative pectinesterase precursor (NCBI ptt file), at 5,372,923 to 5,373,891
BT4109
Position (kb) 5371
5372
5373 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5370.884 kb on - strand, within BT4107 at 5370.895 kb on + strand, within BT4107 at 5370.896 kb on - strand, within BT4107 at 5370.947 kb on + strand, within BT4107 at 5370.948 kb on - strand, within BT4107 at 5370.949 kb on + strand, within BT4107 at 5370.955 kb on - strand, within BT4107 at 5370.988 kb on + strand, within BT4107 at 5370.992 kb on - strand, within BT4107 at 5371.005 kb on + strand, within BT4107 at 5371.005 kb on + strand, within BT4107 at 5371.055 kb on - strand, within BT4107 at 5371.063 kb on + strand, within BT4107 at 5371.097 kb on + strand, within BT4107 at 5371.143 kb on + strand, within BT4107 at 5371.209 kb on - strand, within BT4107 at 5371.221 kb on - strand, within BT4107 at 5371.221 kb on - strand, within BT4107 at 5371.237 kb on + strand, within BT4107 at 5371.237 kb on + strand, within BT4107 at 5371.259 kb on + strand, within BT4107 at 5371.330 kb on + strand at 5371.334 kb on + strand at 5371.341 kb on - strand at 5371.401 kb on - strand at 5371.659 kb on - strand at 5371.692 kb on - strand at 5371.751 kb on + strand at 5371.932 kb on - strand, within BT4108 at 5371.934 kb on - strand, within BT4108 at 5371.938 kb on + strand, within BT4108 at 5371.979 kb on - strand, within BT4108 at 5372.010 kb on + strand, within BT4108 at 5372.011 kb on - strand, within BT4108 at 5372.013 kb on + strand, within BT4108 at 5372.081 kb on - strand, within BT4108 at 5372.188 kb on + strand, within BT4108 at 5372.219 kb on - strand, within BT4108 at 5372.221 kb on - strand, within BT4108 at 5372.236 kb on + strand, within BT4108 at 5372.275 kb on + strand, within BT4108 at 5372.302 kb on - strand, within BT4108 at 5372.320 kb on + strand, within BT4108 at 5372.321 kb on - strand, within BT4108 at 5372.451 kb on - strand, within BT4108 at 5372.519 kb on + strand, within BT4108 at 5372.636 kb on - strand, within BT4108 at 5372.658 kb on + strand, within BT4108 at 5372.668 kb on - strand, within BT4108 at 5372.758 kb on - strand, within BT4108 at 5372.760 kb on - strand, within BT4108 at 5372.824 kb on + strand at 5372.935 kb on - strand at 5373.127 kb on + strand, within BT4109 at 5373.127 kb on + strand, within BT4109 at 5373.176 kb on + strand, within BT4109 at 5373.209 kb on - strand, within BT4109 at 5373.283 kb on - strand, within BT4109 at 5373.346 kb on - strand, within BT4109 at 5373.402 kb on + strand, within BT4109 at 5373.403 kb on - strand, within BT4109 at 5373.403 kb on - strand, within BT4109 at 5373.487 kb on - strand, within BT4109 at 5373.517 kb on - strand, within BT4109 at 5373.535 kb on - strand, within BT4109 at 5373.575 kb on - strand, within BT4109 at 5373.575 kb on - strand, within BT4109 at 5373.575 kb on - strand, within BT4109 at 5373.575 kb on - strand, within BT4109 at 5373.870 kb on + strand at 5373.885 kb on + strand at 5373.890 kb on - strand at 5373.890 kb on - strand at 5373.890 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source Mucin from porcine stomach type III 10 mg/ml remove 5,370,884 - BT4107 0.62 -0.7 5,370,895 + BT4107 0.63 -0.2 5,370,896 - BT4107 0.63 +0.6 5,370,947 + BT4107 0.67 -0.5 5,370,948 - BT4107 0.67 -1.8 5,370,949 + BT4107 0.67 -2.2 5,370,955 - BT4107 0.67 -1.9 5,370,988 + BT4107 0.70 -1.1 5,370,992 - BT4107 0.70 -0.5 5,371,005 + BT4107 0.71 -1.4 5,371,005 + BT4107 0.71 -1.0 5,371,055 - BT4107 0.74 -1.1 5,371,063 + BT4107 0.75 -0.9 5,371,097 + BT4107 0.77 -1.1 5,371,143 + BT4107 0.81 -0.2 5,371,209 - BT4107 0.85 -0.8 5,371,221 - BT4107 0.86 -1.2 5,371,221 - BT4107 0.86 +0.9 5,371,237 + BT4107 0.87 -1.6 5,371,237 + BT4107 0.87 -0.9 5,371,259 + BT4107 0.89 -0.1 5,371,330 + +2.2 5,371,334 + -0.5 5,371,341 - -0.4 5,371,401 - -0.1 5,371,659 - -0.6 5,371,692 - +0.1 5,371,751 + -0.4 5,371,932 - BT4108 0.18 -1.5 5,371,934 - BT4108 0.18 +0.2 5,371,938 + BT4108 0.19 -0.7 5,371,979 - BT4108 0.22 -1.9 5,372,010 + BT4108 0.25 +0.0 5,372,011 - BT4108 0.25 -0.6 5,372,013 + BT4108 0.25 -1.4 5,372,081 - BT4108 0.31 +0.4 5,372,188 + BT4108 0.40 -1.4 5,372,219 - BT4108 0.42 -0.2 5,372,221 - BT4108 0.42 +0.6 5,372,236 + BT4108 0.43 +0.9 5,372,275 + BT4108 0.47 +0.1 5,372,302 - BT4108 0.49 -1.7 5,372,320 + BT4108 0.51 -2.1 5,372,321 - BT4108 0.51 -0.8 5,372,451 - BT4108 0.61 -0.7 5,372,519 + BT4108 0.67 -0.3 5,372,636 - BT4108 0.77 -2.1 5,372,658 + BT4108 0.79 +0.2 5,372,668 - BT4108 0.80 -0.6 5,372,758 - BT4108 0.87 +0.2 5,372,760 - BT4108 0.87 -0.1 5,372,824 + -0.0 5,372,935 - -0.3 5,373,127 + BT4109 0.21 -1.1 5,373,127 + BT4109 0.21 -0.4 5,373,176 + BT4109 0.26 -0.3 5,373,209 - BT4109 0.30 +0.4 5,373,283 - BT4109 0.37 +1.4 5,373,346 - BT4109 0.44 -0.8 5,373,402 + BT4109 0.49 -2.1 5,373,403 - BT4109 0.50 -0.7 5,373,403 - BT4109 0.50 -1.9 5,373,487 - BT4109 0.58 -0.0 5,373,517 - BT4109 0.61 -0.6 5,373,535 - BT4109 0.63 -0.6 5,373,575 - BT4109 0.67 -0.9 5,373,575 - BT4109 0.67 +0.3 5,373,575 - BT4109 0.67 +0.2 5,373,575 - BT4109 0.67 +0.4 5,373,870 + +0.2 5,373,885 + -0.8 5,373,890 - -0.2 5,373,890 - -0.9 5,373,890 - -0.1
Or see this region's nucleotide sequence