Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1496

Experiment: carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml
1,843,721	-		BT1494	0.16	+1.2
1,843,768	+		BT1494	0.36	-0.8
1,843,788	+		BT1494	0.45	-0.9
1,843,830	-		BT1494	0.64	-0.1
1,843,843	+		BT1494	0.70	-2.6
1,843,843	+		BT1494	0.70	-0.5
1,843,905	-				-0.1
1,843,918	+				-0.4
1,843,953	-				+0.2
1,843,964	-				-0.1
1,843,969	+				-1.5
1,843,969	+				-0.4
1,843,992	-				-0.4
1,844,682	-				-0.8
1,844,954	-		BT1496	0.25	+0.5
1,844,954	-		BT1496	0.25	-0.7
1,844,974	-		BT1496	0.27	-0.5
1,844,974	-		BT1496	0.27	-0.1
1,845,029	-		BT1496	0.32	-0.5
1,845,089	-		BT1496	0.38	-0.5
1,845,224	-		BT1496	0.51	-1.0
1,845,242	-		BT1496	0.52	+1.0
1,845,536	-		BT1496	0.80	-1.1
1,845,672	-				-1.6
1,846,104	-				-1.7
1,846,623	-				+1.5
1,846,626	-				-0.1
1,846,663	-				-0.8
1,846,689	+				-1.9
1,846,700	+				-1.4
1,846,708	-				-0.5
1,846,714	+				-0.9
1,846,725	-				-1.5
1,846,728	+				-1.0
1,846,728	+				-1.5