Experiment: carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0558 and BT0559 are separated by 3 nucleotides BT0559 and BT0560 are separated by 200 nucleotides
BT0558: BT0558 - mannose-1-phosphate guanylyltransferase (NCBI ptt file), at 693,733 to 694,785
BT0558
BT0559: BT0559 - transcriptional regulator (NCBI ptt file), at 694,789 to 695,682
BT0559
BT0560: BT0560 - outer membrane efflux protein (NCBI ptt file), at 695,883 to 697,112
BT0560
Position (kb) 694
695
696 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 693.831 kb on - strand at 693.831 kb on - strand at 693.927 kb on + strand, within BT0558 at 693.931 kb on + strand, within BT0558 at 694.018 kb on + strand, within BT0558 at 694.018 kb on + strand, within BT0558 at 694.204 kb on + strand, within BT0558 at 694.207 kb on - strand, within BT0558 at 694.315 kb on + strand, within BT0558 at 694.315 kb on + strand, within BT0558 at 694.357 kb on - strand, within BT0558 at 694.376 kb on + strand, within BT0558 at 694.427 kb on - strand, within BT0558 at 694.596 kb on + strand, within BT0558 at 694.663 kb on - strand, within BT0558 at 694.705 kb on + strand at 694.707 kb on + strand at 694.707 kb on + strand at 694.883 kb on - strand, within BT0559 at 694.934 kb on - strand, within BT0559 at 694.987 kb on + strand, within BT0559 at 694.988 kb on - strand, within BT0559 at 695.001 kb on - strand, within BT0559 at 695.031 kb on - strand, within BT0559 at 695.059 kb on - strand, within BT0559 at 695.148 kb on + strand, within BT0559 at 695.151 kb on - strand, within BT0559 at 695.151 kb on - strand, within BT0559 at 695.151 kb on - strand, within BT0559 at 695.160 kb on + strand, within BT0559 at 695.160 kb on + strand, within BT0559 at 695.168 kb on - strand, within BT0559 at 695.437 kb on - strand, within BT0559 at 695.551 kb on - strand, within BT0559 at 695.628 kb on + strand at 695.776 kb on - strand at 695.791 kb on + strand at 695.799 kb on - strand at 695.807 kb on - strand at 695.915 kb on - strand at 695.921 kb on - strand at 695.949 kb on - strand at 696.082 kb on + strand, within BT0560 at 696.246 kb on - strand, within BT0560 at 696.250 kb on - strand, within BT0560 at 696.280 kb on - strand, within BT0560 at 696.474 kb on + strand, within BT0560 at 696.526 kb on + strand, within BT0560
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml remove 693,831 - -0.3 693,831 - +0.2 693,927 + BT0558 0.18 +0.2 693,931 + BT0558 0.19 -0.1 694,018 + BT0558 0.27 -0.5 694,018 + BT0558 0.27 +0.0 694,204 + BT0558 0.45 -0.6 694,207 - BT0558 0.45 -1.0 694,315 + BT0558 0.55 +0.9 694,315 + BT0558 0.55 -0.1 694,357 - BT0558 0.59 -0.9 694,376 + BT0558 0.61 -0.4 694,427 - BT0558 0.66 -0.1 694,596 + BT0558 0.82 -1.4 694,663 - BT0558 0.88 -0.3 694,705 + -0.2 694,707 + -0.4 694,707 + -0.5 694,883 - BT0559 0.11 -0.3 694,934 - BT0559 0.16 +0.4 694,987 + BT0559 0.22 -0.3 694,988 - BT0559 0.22 -0.3 695,001 - BT0559 0.24 -1.2 695,031 - BT0559 0.27 -0.0 695,059 - BT0559 0.30 -0.0 695,148 + BT0559 0.40 +0.2 695,151 - BT0559 0.40 -2.8 695,151 - BT0559 0.40 -0.1 695,151 - BT0559 0.40 -0.7 695,160 + BT0559 0.41 -1.0 695,160 + BT0559 0.41 +0.4 695,168 - BT0559 0.42 -0.6 695,437 - BT0559 0.72 -0.7 695,551 - BT0559 0.85 -0.6 695,628 + -1.1 695,776 - -1.1 695,791 + +0.8 695,799 - -1.4 695,807 - -0.6 695,915 - +1.3 695,921 - -1.4 695,949 - +1.1 696,082 + BT0560 0.16 -0.0 696,246 - BT0560 0.30 -0.3 696,250 - BT0560 0.30 +0.2 696,280 - BT0560 0.32 -1.1 696,474 + BT0560 0.48 -1.1 696,526 + BT0560 0.52 -0.7
Or see this region's nucleotide sequence