Experiment: carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0699 and BT0700 are separated by 128 nucleotides BT0700 and BT0701 are separated by 106 nucleotides
BT0699: BT0699 - putative sugar transporter (NCBI ptt file), at 870,168 to 871,325
BT0699
BT0700: BT0700 - GTP pyrophosphokinase (NCBI ptt file), at 871,454 to 873,670
BT0700
BT0701: BT0701 - hypothetical protein (NCBI ptt file), at 873,777 to 875,294
BT0701
Position (kb) 871
872
873
874 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 870.611 kb on - strand, within BT0699 at 870.715 kb on + strand, within BT0699 at 870.804 kb on - strand, within BT0699 at 871.000 kb on + strand, within BT0699 at 871.052 kb on - strand, within BT0699 at 871.364 kb on + strand at 871.446 kb on + strand at 871.627 kb on + strand at 871.628 kb on - strand at 871.678 kb on + strand, within BT0700 at 871.679 kb on - strand, within BT0700 at 871.830 kb on + strand, within BT0700 at 871.830 kb on + strand, within BT0700 at 871.831 kb on - strand, within BT0700 at 871.858 kb on + strand, within BT0700 at 871.939 kb on + strand, within BT0700 at 872.342 kb on + strand, within BT0700 at 872.429 kb on + strand, within BT0700 at 872.451 kb on - strand, within BT0700 at 872.457 kb on - strand, within BT0700 at 872.586 kb on + strand, within BT0700 at 872.757 kb on + strand, within BT0700 at 872.757 kb on + strand, within BT0700 at 872.762 kb on - strand, within BT0700 at 872.778 kb on + strand, within BT0700 at 872.779 kb on - strand, within BT0700 at 872.860 kb on + strand, within BT0700 at 872.972 kb on - strand, within BT0700 at 872.994 kb on + strand, within BT0700 at 872.994 kb on + strand, within BT0700 at 873.102 kb on + strand, within BT0700 at 873.103 kb on - strand, within BT0700 at 873.310 kb on - strand, within BT0700 at 873.774 kb on - strand at 873.776 kb on + strand at 873.913 kb on + strand at 873.966 kb on + strand, within BT0701 at 873.969 kb on - strand, within BT0701 at 874.125 kb on + strand, within BT0701 at 874.154 kb on + strand, within BT0701 at 874.197 kb on + strand, within BT0701 at 874.242 kb on + strand, within BT0701 at 874.243 kb on - strand, within BT0701 at 874.281 kb on + strand, within BT0701 at 874.335 kb on + strand, within BT0701 at 874.336 kb on - strand, within BT0701 at 874.366 kb on + strand, within BT0701 at 874.367 kb on - strand, within BT0701 at 874.459 kb on - strand, within BT0701 at 874.461 kb on + strand, within BT0701 at 874.607 kb on + strand, within BT0701 at 874.608 kb on - strand, within BT0701 at 874.611 kb on - strand, within BT0701 at 874.637 kb on - strand, within BT0701 at 874.668 kb on - strand, within BT0701
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml remove 870,611 - BT0699 0.38 -0.2 870,715 + BT0699 0.47 -0.3 870,804 - BT0699 0.55 +0.7 871,000 + BT0699 0.72 +0.9 871,052 - BT0699 0.76 +0.8 871,364 + +0.4 871,446 + -2.7 871,627 + -1.9 871,628 - -1.3 871,678 + BT0700 0.10 -2.3 871,679 - BT0700 0.10 -1.6 871,830 + BT0700 0.17 -1.7 871,830 + BT0700 0.17 -2.1 871,831 - BT0700 0.17 -2.7 871,858 + BT0700 0.18 -3.0 871,939 + BT0700 0.22 -1.6 872,342 + BT0700 0.40 -2.2 872,429 + BT0700 0.44 -3.1 872,451 - BT0700 0.45 -2.0 872,457 - BT0700 0.45 -3.7 872,586 + BT0700 0.51 -2.5 872,757 + BT0700 0.59 -0.7 872,757 + BT0700 0.59 -3.0 872,762 - BT0700 0.59 -2.1 872,778 + BT0700 0.60 -2.3 872,779 - BT0700 0.60 -1.7 872,860 + BT0700 0.63 -2.8 872,972 - BT0700 0.68 -2.1 872,994 + BT0700 0.69 -3.3 872,994 + BT0700 0.69 -1.3 873,102 + BT0700 0.74 -2.7 873,103 - BT0700 0.74 -1.6 873,310 - BT0700 0.84 -2.8 873,774 - +0.1 873,776 + +1.3 873,913 + +0.1 873,966 + BT0701 0.12 +0.5 873,969 - BT0701 0.13 -0.2 874,125 + BT0701 0.23 -0.1 874,154 + BT0701 0.25 -1.1 874,197 + BT0701 0.28 +1.5 874,242 + BT0701 0.31 -2.0 874,243 - BT0701 0.31 -0.9 874,281 + BT0701 0.33 -0.6 874,335 + BT0701 0.37 -1.6 874,336 - BT0701 0.37 -0.7 874,366 + BT0701 0.39 -0.7 874,367 - BT0701 0.39 -0.1 874,459 - BT0701 0.45 -0.5 874,461 + BT0701 0.45 -0.6 874,607 + BT0701 0.55 -1.6 874,608 - BT0701 0.55 -0.0 874,611 - BT0701 0.55 +0.3 874,637 - BT0701 0.57 -0.7 874,668 - BT0701 0.59 -0.6
Or see this region's nucleotide sequence