Experiment: carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0480 and BT0481 are separated by 53 nucleotides BT0481 and BT0482 are separated by 12 nucleotides
BT0480: BT0480 - glycosyltransferase (NCBI ptt file), at 590,713 to 592,119
BT0480
BT0481: BT0481 - polysaccharide export outer membrane protein (NCBI ptt file), at 592,173 to 592,973
BT0481
BT0482: BT0482 - tyrosine-protein kinase ptk (NCBI ptt file), at 592,986 to 595,424
BT0482
Position (kb) 592
593 Strain fitness (log2 ratio) -2
-1
0
1
2 at 591.395 kb on - strand, within BT0480 at 591.395 kb on - strand, within BT0480 at 591.442 kb on - strand, within BT0480 at 591.477 kb on - strand, within BT0480 at 591.573 kb on - strand, within BT0480 at 591.606 kb on - strand, within BT0480 at 591.609 kb on - strand, within BT0480 at 591.712 kb on - strand, within BT0480 at 591.766 kb on - strand, within BT0480 at 591.775 kb on - strand, within BT0480 at 591.777 kb on - strand, within BT0480 at 591.787 kb on - strand, within BT0480 at 591.823 kb on - strand, within BT0480 at 591.826 kb on - strand, within BT0480 at 591.830 kb on + strand, within BT0480 at 591.843 kb on + strand, within BT0480 at 591.843 kb on + strand, within BT0480 at 591.844 kb on - strand, within BT0480 at 591.984 kb on + strand at 592.083 kb on - strand at 592.115 kb on - strand at 592.172 kb on + strand at 592.255 kb on - strand, within BT0481 at 592.419 kb on - strand, within BT0481 at 592.422 kb on - strand, within BT0481 at 592.470 kb on - strand, within BT0481 at 592.495 kb on + strand, within BT0481 at 592.738 kb on + strand, within BT0481 at 592.822 kb on - strand, within BT0481 at 592.910 kb on - strand at 593.061 kb on - strand at 593.111 kb on + strand at 593.128 kb on - strand at 593.156 kb on + strand at 593.236 kb on + strand, within BT0482 at 593.334 kb on + strand, within BT0482 at 593.335 kb on - strand, within BT0482 at 593.338 kb on + strand, within BT0482 at 593.345 kb on + strand, within BT0482 at 593.375 kb on + strand, within BT0482 at 593.511 kb on + strand, within BT0482 at 593.631 kb on - strand, within BT0482 at 593.633 kb on - strand, within BT0482 at 593.671 kb on + strand, within BT0482 at 593.682 kb on + strand, within BT0482 at 593.753 kb on + strand, within BT0482 at 593.753 kb on + strand, within BT0482 at 593.802 kb on - strand, within BT0482 at 593.868 kb on - strand, within BT0482 at 593.873 kb on + strand, within BT0482 at 593.877 kb on - strand, within BT0482
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml remove 591,395 - BT0480 0.48 -0.7 591,395 - BT0480 0.48 -0.4 591,442 - BT0480 0.52 -0.8 591,477 - BT0480 0.54 +1.9 591,573 - BT0480 0.61 -1.7 591,606 - BT0480 0.63 -0.2 591,609 - BT0480 0.64 -0.7 591,712 - BT0480 0.71 -1.1 591,766 - BT0480 0.75 -0.7 591,775 - BT0480 0.75 -0.7 591,777 - BT0480 0.76 +0.0 591,787 - BT0480 0.76 -0.5 591,823 - BT0480 0.79 -0.3 591,826 - BT0480 0.79 -1.0 591,830 + BT0480 0.79 -0.3 591,843 + BT0480 0.80 -0.9 591,843 + BT0480 0.80 -0.6 591,844 - BT0480 0.80 -0.6 591,984 + +0.8 592,083 - -2.5 592,115 - -0.7 592,172 + -1.0 592,255 - BT0481 0.10 -1.3 592,419 - BT0481 0.31 +1.1 592,422 - BT0481 0.31 -1.9 592,470 - BT0481 0.37 -0.2 592,495 + BT0481 0.40 +0.1 592,738 + BT0481 0.71 -1.3 592,822 - BT0481 0.81 +1.3 592,910 - +0.8 593,061 - -1.1 593,111 + -0.2 593,128 - -0.3 593,156 + +0.4 593,236 + BT0482 0.10 -0.3 593,334 + BT0482 0.14 -0.7 593,335 - BT0482 0.14 +0.2 593,338 + BT0482 0.14 +0.5 593,345 + BT0482 0.15 -0.3 593,375 + BT0482 0.16 -0.3 593,511 + BT0482 0.22 -0.5 593,631 - BT0482 0.26 -1.0 593,633 - BT0482 0.27 +0.2 593,671 + BT0482 0.28 -1.9 593,682 + BT0482 0.29 -1.0 593,753 + BT0482 0.31 +0.1 593,753 + BT0482 0.31 -2.5 593,802 - BT0482 0.33 +0.7 593,868 - BT0482 0.36 -2.1 593,873 + BT0482 0.36 -1.0 593,877 - BT0482 0.37 +0.3
Or see this region's nucleotide sequence