Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3288

Experiment: carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml
4,205,831	+				-0.3
4,205,846	+				-1.4
4,205,898	+				-1.9
4,206,025	+		BT3288	0.13	-0.3
4,206,026	-		BT3288	0.13	-1.5
4,206,086	+		BT3288	0.18	-1.1
4,206,086	+		BT3288	0.18	+0.3
4,206,213	-		BT3288	0.27	-0.7
4,206,245	+		BT3288	0.29	-1.2
4,206,268	+		BT3288	0.31	-1.6
4,206,462	-		BT3288	0.45	-0.8
4,206,621	-		BT3288	0.57	-0.6
4,206,686	-		BT3288	0.62	-1.6
4,206,837	-		BT3288	0.73	-0.9
4,206,847	+		BT3288	0.74	-1.3
4,206,847	+		BT3288	0.74	-1.0
4,206,961	-		BT3288	0.82	-0.6
4,206,962	+		BT3288	0.82	-0.3
4,206,970	-		BT3288	0.83	-1.1
4,206,974	+		BT3288	0.83	-1.0
4,207,394	+				+0.7
4,207,405	+				-0.4
4,207,406	-				-0.5
4,207,408	-				+1.1
4,207,524	+		BT3289	0.13	-0.2
4,207,525	-		BT3289	0.13	-0.2
4,207,615	+		BT3289	0.17	-0.1
4,207,704	-		BT3289	0.21	-0.1
4,207,743	-		BT3289	0.23	-0.4
4,207,758	+		BT3289	0.24	-0.1
4,207,758	+		BT3289	0.24	-1.0
4,207,759	-		BT3289	0.24	-0.8
4,207,783	+		BT3289	0.25	+0.0
4,207,786	+		BT3289	0.25	-0.7
4,207,827	+		BT3289	0.27	-0.5
4,207,827	+		BT3289	0.27	-1.4
4,207,912	-		BT3289	0.31	-2.8
4,208,003	-		BT3289	0.35	-1.0
4,208,030	-		BT3289	0.36	-0.8