Experiment: carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0562 and BT0563 are separated by 2 nucleotides BT0563 and BT0564 are separated by 11 nucleotides
BT0562: BT0562 - putative ABC transporter ATP-binding protein (NCBI ptt file), at 698,022 to 699,491
BT0562
BT0563: BT0563 - putative ABC transporter ATP-binding protein or permease protein (NCBI ptt file), at 699,494 to 700,597
BT0563
BT0564: BT0564 - putative ABC transporter permease protein (NCBI ptt file), at 700,609 to 701,724
BT0564
Position (kb) 699
700
701 Strain fitness (log2 ratio) -2
-1
0
1
2 at 698.514 kb on - strand, within BT0562 at 698.606 kb on + strand, within BT0562 at 698.607 kb on - strand, within BT0562 at 698.877 kb on - strand, within BT0562 at 698.894 kb on + strand, within BT0562 at 698.946 kb on + strand, within BT0562 at 698.994 kb on - strand, within BT0562 at 699.313 kb on + strand, within BT0562 at 699.314 kb on - strand, within BT0562 at 699.331 kb on - strand, within BT0562 at 699.505 kb on + strand at 699.505 kb on + strand at 699.593 kb on - strand at 699.775 kb on - strand, within BT0563 at 699.778 kb on + strand, within BT0563 at 699.819 kb on - strand, within BT0563 at 699.820 kb on + strand, within BT0563 at 699.886 kb on + strand, within BT0563 at 699.887 kb on - strand, within BT0563 at 699.890 kb on + strand, within BT0563 at 699.890 kb on + strand, within BT0563 at 699.980 kb on + strand, within BT0563 at 700.107 kb on + strand, within BT0563 at 700.159 kb on - strand, within BT0563 at 700.164 kb on - strand, within BT0563 at 700.324 kb on + strand, within BT0563 at 700.461 kb on - strand, within BT0563 at 700.529 kb on - strand at 700.529 kb on - strand at 700.558 kb on + strand at 700.608 kb on + strand at 700.734 kb on - strand, within BT0564 at 700.753 kb on - strand, within BT0564 at 700.797 kb on + strand, within BT0564 at 700.812 kb on + strand, within BT0564 at 700.847 kb on - strand, within BT0564 at 700.891 kb on - strand, within BT0564 at 700.950 kb on - strand, within BT0564 at 701.026 kb on + strand, within BT0564 at 701.039 kb on + strand, within BT0564 at 701.226 kb on - strand, within BT0564 at 701.244 kb on + strand, within BT0564 at 701.245 kb on - strand, within BT0564 at 701.297 kb on - strand, within BT0564 at 701.411 kb on + strand, within BT0564 at 701.542 kb on - strand, within BT0564 at 701.570 kb on - strand, within BT0564
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml remove 698,514 - BT0562 0.33 +0.1 698,606 + BT0562 0.40 -0.9 698,607 - BT0562 0.40 -1.0 698,877 - BT0562 0.58 -0.2 698,894 + BT0562 0.59 -2.2 698,946 + BT0562 0.63 -0.2 698,994 - BT0562 0.66 -0.4 699,313 + BT0562 0.88 -0.8 699,314 - BT0562 0.88 -0.3 699,331 - BT0562 0.89 -0.4 699,505 + +0.0 699,505 + +1.0 699,593 - -0.2 699,775 - BT0563 0.25 -1.6 699,778 + BT0563 0.26 +0.1 699,819 - BT0563 0.29 -0.1 699,820 + BT0563 0.30 -1.4 699,886 + BT0563 0.36 -0.3 699,887 - BT0563 0.36 -0.5 699,890 + BT0563 0.36 +0.6 699,890 + BT0563 0.36 -1.0 699,980 + BT0563 0.44 +0.3 700,107 + BT0563 0.56 +0.6 700,159 - BT0563 0.60 -0.6 700,164 - BT0563 0.61 -1.2 700,324 + BT0563 0.75 +0.0 700,461 - BT0563 0.88 +1.2 700,529 - -0.6 700,529 - +0.6 700,558 + -1.1 700,608 + -1.6 700,734 - BT0564 0.11 +0.6 700,753 - BT0564 0.13 -1.2 700,797 + BT0564 0.17 -0.2 700,812 + BT0564 0.18 -0.9 700,847 - BT0564 0.21 -0.9 700,891 - BT0564 0.25 +1.1 700,950 - BT0564 0.31 -1.0 701,026 + BT0564 0.37 +0.1 701,039 + BT0564 0.39 -0.4 701,226 - BT0564 0.55 +0.9 701,244 + BT0564 0.57 -0.1 701,245 - BT0564 0.57 -0.3 701,297 - BT0564 0.62 -0.9 701,411 + BT0564 0.72 -0.7 701,542 - BT0564 0.84 +2.6 701,570 - BT0564 0.86 +0.6
Or see this region's nucleotide sequence