Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4206

Experiment: carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT4204 and BT4205 are separated by 21 nucleotidesBT4205 and BT4206 are separated by 10 nucleotidesBT4206 and BT4207 are separated by 11 nucleotides BT4204: BT4204 - conserved hypothetical protein (NCBI ptt file), at 5,540,900 to 5,541,454 BT4204 BT4205: BT4205 - acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (NCBI ptt file), at 5,541,476 to 5,542,243 BT4205 BT4206: BT4206 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (NCBI ptt file), at 5,542,254 to 5,543,639 BT4206 BT4207: BT4207 - UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (NCBI ptt file), at 5,543,651 to 5,544,691 BT4207 Position (kb) 5542 5543 5544Strain fitness (log2 ratio) -1 0 1 2at 5541.478 kb on - strandat 5542.660 kb on - strand, within BT4206at 5542.660 kb on - strand, within BT4206at 5542.709 kb on - strand, within BT4206at 5542.709 kb on - strand, within BT4206

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml
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5,541,478 - +0.6
5,542,660 - BT4206 0.29 -0.7
5,542,660 - BT4206 0.29 -0.8
5,542,709 - BT4206 0.33 -0.5
5,542,709 - BT4206 0.33 +2.2

Or see this region's nucleotide sequence