Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3766

Experiment: carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml
4,885,944	+				-0.1
4,885,948	+				-1.0
4,885,949	-				-0.9
4,886,112	+		BT3765	0.22	+0.7
4,886,198	-		BT3765	0.31	-0.8
4,886,202	-		BT3765	0.31	+0.1
4,886,295	-		BT3765	0.40	-0.8
4,886,315	+		BT3765	0.42	-0.8
4,886,318	-		BT3765	0.43	-0.6
4,886,600	+		BT3765	0.70	+0.3
4,886,600	+		BT3765	0.70	+1.7
4,886,601	-		BT3765	0.70	-1.8
4,886,679	+		BT3765	0.78	-2.2
4,886,679	+		BT3765	0.78	-0.7
4,886,681	+		BT3765	0.78	-0.3
4,886,682	-				-1.1
4,886,682	-		BT3765	0.78	+1.7
4,886,757	-		BT3765	0.86	-1.0
4,886,777	-		BT3765	0.88	-0.3
4,886,786	+		BT3765	0.88	-0.3
4,886,792	-		BT3765	0.89	-0.0
4,886,908	-				-1.5
4,886,912	-				-0.8
4,886,968	+				-1.2
4,887,026	+		BT3766	0.14	-1.3
4,887,034	+		BT3766	0.15	-2.0
4,887,038	+		BT3766	0.15	-2.3
4,887,214	+		BT3766	0.37	-1.3
4,887,214	+		BT3766	0.37	-1.3
4,887,292	+		BT3766	0.46	-2.1
4,887,326	+		BT3766	0.51	-2.4
4,887,486	-		BT3766	0.70	+0.3
4,887,486	-		BT3766	0.70	-1.2
4,887,532	-		BT3766	0.76	-1.6
4,887,532	-		BT3766	0.76	-0.8
4,887,539	-		BT3766	0.77	-1.5
4,887,539	-		BT3766	0.77	-1.2
4,887,572	-		BT3766	0.81	-0.9
4,887,584	+		BT3766	0.82	-2.2
4,887,584	+		BT3766	0.82	-1.1
4,887,633	+		BT3766	0.89	-1.8
4,887,727	-				-1.8
4,887,732	+				-0.7
4,887,851	+				+1.1
4,887,852	-				-0.5
4,887,908	-				-0.0
4,887,931	+				-0.9
4,887,931	+				-0.4
4,887,991	+		BT3767	0.15	-0.8
4,887,992	-		BT3767	0.15	-2.1
4,888,010	-		BT3767	0.16	+0.9
4,888,017	+		BT3767	0.17	-1.3
4,888,040	-		BT3767	0.19	-0.3
4,888,088	-		BT3767	0.23	-0.2
4,888,115	-		BT3767	0.25	-0.0
4,888,138	+				-0.3
4,888,231	+		BT3767	0.35	-0.2
4,888,232	-		BT3767	0.36	-1.0
4,888,261	+		BT3767	0.38	+1.7
4,888,269	-		BT3767	0.39	+0.3
4,888,306	-		BT3767	0.42	-1.3
4,888,311	+		BT3767	0.42	-1.2
4,888,336	-		BT3767	0.45	-0.6
4,888,339	+		BT3767	0.45	-0.6
4,888,340	-		BT3767	0.45	-0.3
4,888,344	+		BT3767	0.45	-0.2
4,888,345	-		BT3767	0.45	-0.9
4,888,345	-		BT3767	0.45	+0.5
4,888,397	-		BT3767	0.50	-0.7
4,888,427	+		BT3767	0.52	-0.4
4,888,429	+		BT3767	0.53	+0.2
4,888,429	+		BT3767	0.53	-0.8
4,888,431	+		BT3767	0.53	-0.1
4,888,431	+		BT3767	0.53	-0.7
4,888,459	+		BT3767	0.55	-0.7
4,888,517	-		BT3767	0.60	-1.1
4,888,563	-		BT3767	0.64	-0.7
4,888,563	-		BT3767	0.64	-0.5
4,888,564	+		BT3767	0.64	-0.6
4,888,638	-		BT3767	0.71	-0.5
4,888,643	-		BT3767	0.71	-0.7
4,888,643	-		BT3767	0.71	+0.1
4,888,643	-		BT3767	0.71	-0.3
4,888,674	+		BT3767	0.74	-0.0
4,888,679	+		BT3767	0.74	+0.5
4,888,691	+		BT3767	0.75	-0.2
4,888,692	-		BT3767	0.75	-0.5
4,888,692	-		BT3767	0.75	-0.3
4,888,721	+		BT3767	0.78	-0.0
4,888,721	+		BT3767	0.78	-0.3
4,888,723	+		BT3767	0.78	-0.7
4,888,724	-		BT3767	0.78	-1.8
4,888,724	-		BT3767	0.78	-0.9