Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1221

Experiment: carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml
1,517,230	-				-0.5
1,517,237	-				+0.6
1,517,241	-				-0.7
1,517,314	+				+0.3
1,517,322	+				-0.8
1,517,348	+				-0.6
1,517,365	+				-0.9
1,517,390	+				-0.5
1,517,391	-				-0.1
1,517,395	-				-0.6
1,517,395	-				-0.0
1,517,395	-				-0.3
1,517,447	-				-1.2
1,517,461	+				-1.4
1,517,462	-				-0.6
1,517,463	+				-1.9
1,517,465	+				-1.2
1,517,465	+				-1.4
1,517,466	-				+0.2
1,517,466	-				-0.9
1,517,469	-				-0.8
1,517,469	-				-0.8
1,517,470	+				-1.1
1,517,481	+				-1.2
1,517,515	+				-2.0
1,517,516	-				-2.9
1,517,568	+				-5.0
1,517,569	-		BT1220	0.10	-4.7
1,517,571	-		BT1220	0.10	-3.7
1,517,571	-		BT1220	0.10	-4.2
1,517,572	+				-5.4
1,517,573	-		BT1220	0.11	-4.1
1,517,775	-		BT1220	0.40	-5.6
1,517,783	+				-4.0
1,517,784	-		BT1220	0.41	-4.1
1,517,784	-		BT1220	0.41	-4.3
1,517,929	+		BT1220	0.62	-4.4
1,517,974	+		BT1220	0.69	-4.6
1,517,979	-		BT1220	0.70	-5.6
1,518,050	+				-4.0
1,518,115	-		BT1220	0.89	-3.9
1,518,226	-				-3.8
1,518,289	+				-4.0
1,518,290	-				-1.2
1,518,290	-				-2.4
1,518,290	-				-1.2
1,518,334	-				-1.7
1,518,369	-		BT1221	0.10	-1.3
1,518,423	-		BT1221	0.14	-2.5
1,518,423	-		BT1221	0.14	-1.6
1,518,465	+		BT1221	0.17	-4.8
1,518,574	+		BT1221	0.24	-5.8
1,518,575	-		BT1221	0.24	-3.4
1,518,773	-		BT1221	0.37	-2.7
1,518,773	-		BT1221	0.37	-1.5
1,518,774	+				-3.9
1,518,844	+		BT1221	0.42	-4.1
1,518,845	-		BT1221	0.42	-2.7
1,518,862	+				-4.8
1,518,907	-		BT1221	0.46	-1.7
1,518,917	+				-5.1
1,519,279	+		BT1221	0.71	-5.2
1,519,375	+		BT1221	0.78	-4.1
1,519,396	+		BT1221	0.79	-3.8
1,519,518	-		BT1221	0.87	-5.2
1,519,546	-		BT1221	0.89	-4.5
1,519,598	-				-5.1
1,519,636	-				-5.8
1,519,735	+				-5.2
1,519,838	+				-4.5
1,519,838	+				-4.4
1,519,848	+				-4.8
1,520,056	+				-4.8
1,520,056	+				-2.4
1,520,057	-				-0.7
1,520,061	+				-4.8
1,520,061	+				-4.4
1,520,063	+				-5.1
1,520,063	+				-5.7
1,520,063	+				-4.1
1,520,148	+				-6.2
1,520,148	+				-3.1
1,520,327	+		BT1222	0.19	-4.2
1,520,327	+				-4.7
1,520,380	+				-5.3
1,520,380	+		BT1222	0.22	-4.7
1,520,562	+				-3.4
1,520,565	+		BT1222	0.35	-6.0
1,520,571	+		BT1222	0.35	-4.5
1,520,580	+				-3.8