Experiment: NoPredeControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS21085 and BWI76_RS21090 are separated by 26 nucleotides BWI76_RS21090 and BWI76_RS21095 are separated by 275 nucleotides
BWI76_RS21085: BWI76_RS21085 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin), at 4,411,249 to 4,412,370
_RS21085
BWI76_RS21090: BWI76_RS21090 - cytoskeletal protein RodZ, at 4,412,397 to 4,413,356
_RS21090
BWI76_RS21095: BWI76_RS21095 - bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN, at 4,413,632 to 4,414,798
_RS21095
Position (kb) 4412
4413
4414 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4412.571 kb on - strand, within BWI76_RS21090 at 4412.571 kb on - strand, within BWI76_RS21090 at 4412.757 kb on - strand, within BWI76_RS21090 at 4412.785 kb on - strand at 4413.410 kb on - strand at 4413.440 kb on + strand at 4413.450 kb on - strand at 4413.450 kb on - strand at 4413.612 kb on - strand at 4413.677 kb on - strand at 4413.677 kb on - strand at 4413.679 kb on + strand at 4414.089 kb on + strand, within BWI76_RS21095
Per-strain Table
Position Strand Gene LocusTag Fraction NoPredeControl remove 4,412,571 - BWI76_RS21090 0.18 -0.1 4,412,571 - BWI76_RS21090 0.18 -2.3 4,412,757 - BWI76_RS21090 0.38 -0.2 4,412,785 - +3.8 4,413,410 - -1.3 4,413,440 + -0.5 4,413,450 - +0.5 4,413,450 - -0.2 4,413,612 - +0.4 4,413,677 - -0.6 4,413,677 - +0.3 4,413,679 + +0.8 4,414,089 + BWI76_RS21095 0.39 +2.8
Or see this region's nucleotide sequence