Experiment: NoPredeControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19965 and BWI76_RS19970 overlap by 11 nucleotides BWI76_RS19970 and BWI76_RS19975 overlap by 4 nucleotides
BWI76_RS19965: BWI76_RS19965 - sn-glycerol-3-phosphate dehydrogenase subunit A, at 4,181,729 to 4,183,351
_RS19965
BWI76_RS19970: BWI76_RS19970 - anaerobic glycerol-3-phosphate dehydrogenase subunit B, at 4,183,341 to 4,184,600
_RS19970
BWI76_RS19975: BWI76_RS19975 - sn-glycerol-3-phosphate dehydrogenase subunit C, at 4,184,597 to 4,185,776
_RS19975
Position (kb)
4183
4184
4185 Strain fitness (log2 ratio)
-1
0
1
2 at 4182.391 kb on - strand, within BWI76_RS19965 at 4183.052 kb on + strand, within BWI76_RS19965 at 4183.305 kb on + strand at 4183.393 kb on + strand at 4183.402 kb on - strand at 4183.647 kb on - strand, within BWI76_RS19970 at 4183.655 kb on + strand, within BWI76_RS19970 at 4184.257 kb on + strand, within BWI76_RS19970 at 4184.594 kb on + strand at 4184.825 kb on - strand, within BWI76_RS19975 at 4185.312 kb on + strand, within BWI76_RS19975 at 4185.313 kb on - strand at 4185.319 kb on + strand, within BWI76_RS19975 at 4185.319 kb on + strand, within BWI76_RS19975 at 4185.327 kb on - strand at 4185.327 kb on - strand, within BWI76_RS19975 at 4185.327 kb on - strand, within BWI76_RS19975 at 4185.327 kb on - strand, within BWI76_RS19975 at 4185.522 kb on - strand, within BWI76_RS19975
Per-strain Table
Position Strand Gene LocusTag Fraction NoPredeControl remove 4,182,391 - BWI76_RS19965 0.41 +0.9 4,183,052 + BWI76_RS19965 0.82 +1.0 4,183,305 + -0.1 4,183,393 + +0.5 4,183,402 - -0.3 4,183,647 - BWI76_RS19970 0.24 +2.3 4,183,655 + BWI76_RS19970 0.25 -0.4 4,184,257 + BWI76_RS19970 0.73 +0.0 4,184,594 + -0.7 4,184,825 - BWI76_RS19975 0.19 +0.4 4,185,312 + BWI76_RS19975 0.61 -0.6 4,185,313 - -1.6 4,185,319 + BWI76_RS19975 0.61 +2.0 4,185,319 + BWI76_RS19975 0.61 -0.3 4,185,327 - +2.0 4,185,327 - BWI76_RS19975 0.62 -0.2 4,185,327 - BWI76_RS19975 0.62 -0.0 4,185,327 - BWI76_RS19975 0.62 +0.1 4,185,522 - BWI76_RS19975 0.78 -1.2
Or see this region's nucleotide sequence