Experiment: NoPredeControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13925 and BWI76_RS13930 are separated by 265 nucleotides BWI76_RS13930 and BWI76_RS13935 are separated by 99 nucleotides BWI76_RS13935 and BWI76_RS13940 are separated by 9 nucleotides
BWI76_RS13925: BWI76_RS13925 - catalase/peroxidase HPI, at 2,907,165 to 2,909,348
_RS13925
BWI76_RS13930: BWI76_RS13930 - putative LysR-family transcriptional regulator, at 2,909,614 to 2,910,546
_RS13930
BWI76_RS13935: BWI76_RS13935 - hypothetical protein, at 2,910,646 to 2,911,080
_RS13935
BWI76_RS13940: BWI76_RS13940 - membrane protein, at 2,911,090 to 2,911,554
_RS13940
Position (kb)
2909
2910
2911 Strain fitness (log2 ratio)
-1
0
1
2 at 2908.644 kb on - strand, within BWI76_RS13925 at 2908.663 kb on + strand, within BWI76_RS13925 at 2909.003 kb on + strand, within BWI76_RS13925 at 2909.021 kb on - strand at 2909.081 kb on + strand, within BWI76_RS13925 at 2909.526 kb on + strand at 2909.557 kb on - strand at 2909.626 kb on + strand at 2909.626 kb on + strand at 2909.634 kb on - strand at 2909.962 kb on - strand, within BWI76_RS13930 at 2910.272 kb on - strand, within BWI76_RS13930 at 2910.417 kb on + strand, within BWI76_RS13930 at 2910.425 kb on - strand, within BWI76_RS13930 at 2910.425 kb on - strand, within BWI76_RS13930 at 2910.687 kb on + strand at 2910.840 kb on + strand, within BWI76_RS13935 at 2911.090 kb on - strand at 2911.132 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPredeControl remove 2,908,644 - BWI76_RS13925 0.68 +0.4 2,908,663 + BWI76_RS13925 0.69 -0.4 2,909,003 + BWI76_RS13925 0.84 -0.3 2,909,021 - +0.7 2,909,081 + BWI76_RS13925 0.88 -0.2 2,909,526 + +2.3 2,909,557 - +0.1 2,909,626 + +0.2 2,909,626 + +2.5 2,909,634 - +1.1 2,909,962 - BWI76_RS13930 0.37 +0.3 2,910,272 - BWI76_RS13930 0.71 -1.3 2,910,417 + BWI76_RS13930 0.86 +2.5 2,910,425 - BWI76_RS13930 0.87 +1.6 2,910,425 - BWI76_RS13930 0.87 -0.3 2,910,687 + +0.2 2,910,840 + BWI76_RS13935 0.45 +0.3 2,911,090 - -0.3 2,911,132 - -1.0
Or see this region's nucleotide sequence