Experiment: NoPredeControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09125 and BWI76_RS09130 are separated by 376 nucleotides BWI76_RS09130 and BWI76_RS09135 are separated by 104 nucleotides BWI76_RS09135 and BWI76_RS09140 are separated by 2 nucleotides BWI76_RS09140 and BWI76_RS09145 are separated by 257 nucleotides
BWI76_RS09125: BWI76_RS09125 - MFS transporter, at 1,927,852 to 1,929,096
_RS09125
BWI76_RS09130: BWI76_RS09130 - biofilm formation regulatory protein BssR, at 1,929,473 to 1,929,856
_RS09130
BWI76_RS09135: BWI76_RS09135 - oxidoreductase, at 1,929,961 to 1,931,073
_RS09135
BWI76_RS09140: BWI76_RS09140 - glutathione S-transferase, at 1,931,076 to 1,931,702
_RS09140
BWI76_RS09145: BWI76_RS09145 - serine-type D-Ala-D-Ala carboxypeptidase, at 1,931,960 to 1,933,162
_RS09145
Position (kb) 1929
1930
1931
1932 Strain fitness (log2 ratio) -1
0
1
2 at 1929.039 kb on - strand at 1929.105 kb on + strand at 1929.126 kb on - strand at 1929.476 kb on + strand at 1929.495 kb on - strand at 1929.619 kb on + strand, within BWI76_RS09130 at 1929.740 kb on + strand, within BWI76_RS09130 at 1929.748 kb on - strand, within BWI76_RS09130 at 1929.929 kb on - strand at 1930.520 kb on - strand, within BWI76_RS09135 at 1930.603 kb on + strand, within BWI76_RS09135 at 1930.603 kb on + strand, within BWI76_RS09135 at 1930.611 kb on - strand, within BWI76_RS09135 at 1930.730 kb on + strand, within BWI76_RS09135 at 1931.042 kb on - strand at 1931.229 kb on + strand, within BWI76_RS09140 at 1931.268 kb on + strand, within BWI76_RS09140 at 1931.352 kb on - strand, within BWI76_RS09140 at 1931.352 kb on - strand, within BWI76_RS09140 at 1931.400 kb on - strand, within BWI76_RS09140 at 1931.881 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPredeControl remove 1,929,039 - -0.9 1,929,105 + +1.0 1,929,126 - +0.7 1,929,476 + -1.2 1,929,495 - +1.8 1,929,619 + BWI76_RS09130 0.38 -0.4 1,929,740 + BWI76_RS09130 0.70 -0.4 1,929,748 - BWI76_RS09130 0.72 -0.4 1,929,929 - -0.8 1,930,520 - BWI76_RS09135 0.50 -0.5 1,930,603 + BWI76_RS09135 0.58 +1.4 1,930,603 + BWI76_RS09135 0.58 +0.9 1,930,611 - BWI76_RS09135 0.58 -0.4 1,930,730 + BWI76_RS09135 0.69 +0.7 1,931,042 - +0.2 1,931,229 + BWI76_RS09140 0.24 -0.3 1,931,268 + BWI76_RS09140 0.31 -0.5 1,931,352 - BWI76_RS09140 0.44 +0.1 1,931,352 - BWI76_RS09140 0.44 +0.2 1,931,400 - BWI76_RS09140 0.52 +0.0 1,931,881 + +0.6
Or see this region's nucleotide sequence