Experiment: NoPredeControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09035 and BWI76_RS09040 are separated by 177 nucleotides BWI76_RS09040 and BWI76_RS09045 are separated by 168 nucleotides
BWI76_RS09035: BWI76_RS09035 - protein tyrosine/serine phosphatase, at 1,903,409 to 1,904,191
_RS09035
BWI76_RS09040: BWI76_RS09040 - ABC-F family ATPase, at 1,904,369 to 1,905,961
_RS09040
BWI76_RS09045: BWI76_RS09045 - alpha-glucosidase, at 1,906,130 to 1,908,493
_RS09045
Position (kb)
1904
1905
1906 Strain fitness (log2 ratio)
-1
0
1 at 1903.632 kb on + strand, within BWI76_RS09035 at 1903.632 kb on + strand, within BWI76_RS09035 at 1903.717 kb on - strand, within BWI76_RS09035 at 1903.737 kb on + strand, within BWI76_RS09035 at 1903.883 kb on - strand, within BWI76_RS09035 at 1904.009 kb on + strand, within BWI76_RS09035 at 1904.233 kb on + strand at 1904.339 kb on + strand at 1904.398 kb on + strand at 1904.398 kb on + strand at 1904.610 kb on - strand, within BWI76_RS09040 at 1904.649 kb on - strand, within BWI76_RS09040 at 1904.812 kb on + strand, within BWI76_RS09040 at 1904.852 kb on - strand, within BWI76_RS09040 at 1904.946 kb on + strand, within BWI76_RS09040 at 1905.721 kb on + strand, within BWI76_RS09040 at 1905.940 kb on - strand at 1905.943 kb on + strand at 1905.951 kb on - strand at 1906.042 kb on + strand at 1906.276 kb on - strand at 1906.302 kb on + strand at 1906.397 kb on + strand, within BWI76_RS09045 at 1906.699 kb on + strand, within BWI76_RS09045 at 1906.737 kb on + strand, within BWI76_RS09045 at 1906.794 kb on - strand, within BWI76_RS09045
Per-strain Table
Position Strand Gene LocusTag Fraction NoPredeControl remove 1,903,632 + BWI76_RS09035 0.28 +0.9 1,903,632 + BWI76_RS09035 0.28 +0.1 1,903,717 - BWI76_RS09035 0.39 +0.5 1,903,737 + BWI76_RS09035 0.42 -0.9 1,903,883 - BWI76_RS09035 0.61 -0.7 1,904,009 + BWI76_RS09035 0.77 -0.2 1,904,233 + -1.1 1,904,339 + -0.9 1,904,398 + -0.0 1,904,398 + -0.4 1,904,610 - BWI76_RS09040 0.15 +0.8 1,904,649 - BWI76_RS09040 0.18 +0.6 1,904,812 + BWI76_RS09040 0.28 +0.6 1,904,852 - BWI76_RS09040 0.30 +1.4 1,904,946 + BWI76_RS09040 0.36 +0.1 1,905,721 + BWI76_RS09040 0.85 +0.8 1,905,940 - -0.4 1,905,943 + +0.4 1,905,951 - +0.1 1,906,042 + +0.3 1,906,276 - +0.3 1,906,302 + -0.3 1,906,397 + BWI76_RS09045 0.11 -0.1 1,906,699 + BWI76_RS09045 0.24 -0.2 1,906,737 + BWI76_RS09045 0.26 +0.4 1,906,794 - BWI76_RS09045 0.28 +0.0
Or see this region's nucleotide sequence