Experiment: NoPredeControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06225 and BWI76_RS06230 are separated by 294 nucleotides BWI76_RS06230 and BWI76_RS06235 are separated by 21 nucleotides
BWI76_RS06225: BWI76_RS06225 - exonuclease sbcCD subunit D, at 1,306,246 to 1,307,448
_RS06225
BWI76_RS06230: BWI76_RS06230 - DNA-binding response regulator, at 1,307,743 to 1,308,432
_RS06230
BWI76_RS06235: BWI76_RS06235 - PAS domain-containing sensor histidine kinase, at 1,308,454 to 1,309,743
_RS06235
Position (kb)
1307
1308
1309 Strain fitness (log2 ratio)
-1
0
1
2 at 1306.854 kb on - strand, within BWI76_RS06225 at 1306.946 kb on - strand, within BWI76_RS06225 at 1307.040 kb on - strand, within BWI76_RS06225 at 1307.278 kb on + strand, within BWI76_RS06225 at 1307.278 kb on + strand, within BWI76_RS06225 at 1307.431 kb on + strand at 1307.432 kb on - strand at 1307.514 kb on - strand at 1307.514 kb on - strand at 1307.530 kb on + strand at 1307.540 kb on - strand at 1307.567 kb on + strand at 1307.575 kb on - strand at 1307.707 kb on + strand at 1307.707 kb on + strand at 1307.707 kb on + strand at 1307.855 kb on + strand, within BWI76_RS06230 at 1307.865 kb on + strand, within BWI76_RS06230 at 1307.933 kb on + strand, within BWI76_RS06230 at 1308.435 kb on + strand at 1308.444 kb on + strand at 1308.454 kb on + strand at 1308.850 kb on - strand, within BWI76_RS06235 at 1309.114 kb on + strand, within BWI76_RS06235 at 1309.256 kb on - strand, within BWI76_RS06235 at 1309.312 kb on + strand, within BWI76_RS06235 at 1309.374 kb on - strand, within BWI76_RS06235
Per-strain Table
Position Strand Gene LocusTag Fraction NoPredeControl remove 1,306,854 - BWI76_RS06225 0.51 -0.3 1,306,946 - BWI76_RS06225 0.58 -0.9 1,307,040 - BWI76_RS06225 0.66 -0.3 1,307,278 + BWI76_RS06225 0.86 +1.4 1,307,278 + BWI76_RS06225 0.86 -0.4 1,307,431 + +0.4 1,307,432 - -0.1 1,307,514 - +0.1 1,307,514 - -0.2 1,307,530 + +0.1 1,307,540 - +0.0 1,307,567 + +0.7 1,307,575 - -0.2 1,307,707 + +0.9 1,307,707 + +0.4 1,307,707 + -1.3 1,307,855 + BWI76_RS06230 0.16 +2.4 1,307,865 + BWI76_RS06230 0.18 +1.8 1,307,933 + BWI76_RS06230 0.28 -0.7 1,308,435 + +0.1 1,308,444 + +0.2 1,308,454 + +0.3 1,308,850 - BWI76_RS06235 0.31 +0.3 1,309,114 + BWI76_RS06235 0.51 -0.1 1,309,256 - BWI76_RS06235 0.62 -0.5 1,309,312 + BWI76_RS06235 0.67 -1.0 1,309,374 - BWI76_RS06235 0.71 +0.4
Or see this region's nucleotide sequence