Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS04910

Experiment: NoPredeControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS04905 and BWI76_RS04910 are separated by 334 nucleotidesBWI76_RS04910 and BWI76_RS04915 are separated by 175 nucleotidesBWI76_RS04915 and BWI76_RS04920 are separated by 31 nucleotides BWI76_RS04905: BWI76_RS04905 - DUF3300 domain-containing protein, at 1,027,508 to 1,029,094 _RS04905 BWI76_RS04910: BWI76_RS04910 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase, at 1,029,429 to 1,032,047 _RS04910 BWI76_RS04915: BWI76_RS04915 - hypothetical protein, at 1,032,223 to 1,032,585 _RS04915 BWI76_RS04920: BWI76_RS04920 - S-adenosylmethionine decarboxylase, at 1,032,617 to 1,033,411 _RS04920 Position (kb) 1029 1030 1031 1032 1033Strain fitness (log2 ratio) -2 -1 0 1 2at 1028.712 kb on - strand, within BWI76_RS04905at 1028.831 kb on - strand, within BWI76_RS04905at 1028.846 kb on + strand, within BWI76_RS04905at 1028.926 kb on - strand, within BWI76_RS04905at 1028.926 kb on - strand, within BWI76_RS04905at 1028.926 kb on - strand, within BWI76_RS04905at 1028.962 kb on - strandat 1029.131 kb on + strandat 1029.241 kb on + strandat 1029.249 kb on - strandat 1029.276 kb on - strandat 1032.184 kb on + strandat 1032.320 kb on + strand, within BWI76_RS04915at 1032.326 kb on + strand, within BWI76_RS04915at 1032.367 kb on + strand, within BWI76_RS04915at 1032.367 kb on + strand, within BWI76_RS04915at 1032.436 kb on + strand, within BWI76_RS04915at 1032.587 kb on - strandat 1032.614 kb on + strandat 1032.614 kb on + strandat 1032.686 kb on - strandat 1032.736 kb on - strand, within BWI76_RS04920at 1032.744 kb on - strand, within BWI76_RS04920at 1032.809 kb on + strand, within BWI76_RS04920at 1032.842 kb on + strand, within BWI76_RS04920at 1032.927 kb on - strand, within BWI76_RS04920at 1032.995 kb on + strand, within BWI76_RS04920

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPredeControl
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1,028,712 - BWI76_RS04905 0.76 +0.5
1,028,831 - BWI76_RS04905 0.83 -0.8
1,028,846 + BWI76_RS04905 0.84 +0.2
1,028,926 - BWI76_RS04905 0.89 +1.0
1,028,926 - BWI76_RS04905 0.89 +0.0
1,028,926 - BWI76_RS04905 0.89 -0.2
1,028,962 - +2.0
1,029,131 + +0.0
1,029,241 + -1.0
1,029,249 - +1.0
1,029,276 - -0.9
1,032,184 + +0.2
1,032,320 + BWI76_RS04915 0.27 -0.0
1,032,326 + BWI76_RS04915 0.28 -0.8
1,032,367 + BWI76_RS04915 0.40 -0.6
1,032,367 + BWI76_RS04915 0.40 -0.2
1,032,436 + BWI76_RS04915 0.59 +0.1
1,032,587 - -0.0
1,032,614 + -0.7
1,032,614 + +0.2
1,032,686 - -0.8
1,032,736 - BWI76_RS04920 0.15 -1.9
1,032,744 - BWI76_RS04920 0.16 -0.2
1,032,809 + BWI76_RS04920 0.24 +0.7
1,032,842 + BWI76_RS04920 0.28 -1.3
1,032,927 - BWI76_RS04920 0.39 +0.2
1,032,995 + BWI76_RS04920 0.48 -0.3

Or see this region's nucleotide sequence