Experiment: NoPredeControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04895 and BWI76_RS04900 are separated by 50 nucleotides BWI76_RS04900 and BWI76_RS04905 are separated by 10 nucleotides BWI76_RS04905 and BWI76_RS04910 are separated by 334 nucleotides
BWI76_RS04895: BWI76_RS04895 - hypothetical protein, at 1,026,368 to 1,026,652
_RS04895
BWI76_RS04900: BWI76_RS04900 - DUF2950 domain-containing protein, at 1,026,703 to 1,027,497
_RS04900
BWI76_RS04905: BWI76_RS04905 - DUF3300 domain-containing protein, at 1,027,508 to 1,029,094
_RS04905
BWI76_RS04910: BWI76_RS04910 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase, at 1,029,429 to 1,032,047
_RS04910
Position (kb)
1027
1028
1029
1030 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1026.944 kb on - strand, within BWI76_RS04900 at 1027.291 kb on - strand, within BWI76_RS04900 at 1027.562 kb on - strand at 1027.630 kb on - strand at 1027.667 kb on - strand, within BWI76_RS04905 at 1027.786 kb on + strand, within BWI76_RS04905 at 1028.048 kb on - strand, within BWI76_RS04905 at 1028.268 kb on + strand, within BWI76_RS04905 at 1028.712 kb on - strand, within BWI76_RS04905 at 1028.831 kb on - strand, within BWI76_RS04905 at 1028.846 kb on + strand, within BWI76_RS04905 at 1028.926 kb on - strand, within BWI76_RS04905 at 1028.926 kb on - strand, within BWI76_RS04905 at 1028.926 kb on - strand, within BWI76_RS04905 at 1028.962 kb on - strand at 1029.131 kb on + strand at 1029.241 kb on + strand at 1029.249 kb on - strand at 1029.276 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPredeControl remove 1,026,944 - BWI76_RS04900 0.30 -0.2 1,027,291 - BWI76_RS04900 0.74 +3.0 1,027,562 - -0.1 1,027,630 - -0.8 1,027,667 - BWI76_RS04905 0.10 -0.4 1,027,786 + BWI76_RS04905 0.18 -0.4 1,028,048 - BWI76_RS04905 0.34 -0.4 1,028,268 + BWI76_RS04905 0.48 +0.3 1,028,712 - BWI76_RS04905 0.76 +0.5 1,028,831 - BWI76_RS04905 0.83 -0.8 1,028,846 + BWI76_RS04905 0.84 +0.2 1,028,926 - BWI76_RS04905 0.89 +1.0 1,028,926 - BWI76_RS04905 0.89 +0.0 1,028,926 - BWI76_RS04905 0.89 -0.2 1,028,962 - +2.0 1,029,131 + +0.0 1,029,241 + -1.0 1,029,249 - +1.0 1,029,276 - -0.9
Or see this region's nucleotide sequence