Experiment: LB_DAP agar plate, outgrowth in LB_gent
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS28060 and BPHYT_RS28065 are separated by 288 nucleotides BPHYT_RS28065 and BPHYT_RS28070 are separated by 152 nucleotides BPHYT_RS28070 and BPHYT_RS28075 are separated by 133 nucleotides BPHYT_RS28075 and BPHYT_RS28080 are separated by 195 nucleotides
BPHYT_RS28060: BPHYT_RS28060 - hypothetical protein, at 1,859,816 to 1,860,073
_RS28060
BPHYT_RS28065: BPHYT_RS28065 - hypothetical protein, at 1,860,362 to 1,860,859
_RS28065
BPHYT_RS28070: BPHYT_RS28070 - adenine permease, at 1,861,012 to 1,862,313
_RS28070
BPHYT_RS28075: BPHYT_RS28075 - cytochrome B561, at 1,862,447 to 1,862,977
_RS28075
BPHYT_RS28080: BPHYT_RS28080 - hypothetical protein, at 1,863,173 to 1,863,463
_RS28080
Position (kb) 1861
1862
1863 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1860.282 kb on - strand at 1860.319 kb on + strand at 1860.319 kb on + strand at 1860.320 kb on - strand at 1860.416 kb on + strand, within BPHYT_RS28065 at 1860.417 kb on - strand, within BPHYT_RS28065 at 1861.022 kb on + strand at 1861.023 kb on - strand at 1861.109 kb on - strand at 1861.109 kb on - strand at 1861.109 kb on - strand at 1861.229 kb on - strand, within BPHYT_RS28070 at 1861.276 kb on + strand, within BPHYT_RS28070 at 1861.410 kb on - strand, within BPHYT_RS28070 at 1861.921 kb on + strand, within BPHYT_RS28070 at 1861.921 kb on + strand, within BPHYT_RS28070 at 1861.922 kb on - strand, within BPHYT_RS28070 at 1861.923 kb on + strand, within BPHYT_RS28070 at 1862.065 kb on + strand, within BPHYT_RS28070 at 1862.444 kb on + strand at 1862.444 kb on + strand at 1862.445 kb on - strand at 1862.445 kb on - strand at 1862.454 kb on - strand at 1862.652 kb on + strand, within BPHYT_RS28075
Per-strain Table
Position Strand Gene LocusTag Fraction LB_DAP agar plate, outgrowth in LB_gent remove 1,860,282 - +0.5 1,860,319 + -0.0 1,860,319 + -0.5 1,860,320 - +0.6 1,860,416 + BPHYT_RS28065 0.11 -1.0 1,860,417 - BPHYT_RS28065 0.11 -3.4 1,861,022 + +0.8 1,861,023 - +1.1 1,861,109 - +2.3 1,861,109 - -0.3 1,861,109 - +0.4 1,861,229 - BPHYT_RS28070 0.17 -0.0 1,861,276 + BPHYT_RS28070 0.20 +0.9 1,861,410 - BPHYT_RS28070 0.31 +0.3 1,861,921 + BPHYT_RS28070 0.70 -0.4 1,861,921 + BPHYT_RS28070 0.70 -0.1 1,861,922 - BPHYT_RS28070 0.70 -0.4 1,861,923 + BPHYT_RS28070 0.70 +0.6 1,862,065 + BPHYT_RS28070 0.81 +0.7 1,862,444 + +0.5 1,862,444 + +0.2 1,862,445 - +0.2 1,862,445 - +0.1 1,862,454 - -2.2 1,862,652 + BPHYT_RS28075 0.39 +1.7
Or see this region's nucleotide sequence