Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23165

Experiment: LB_DAP agar plate, outgrowth in LB_gent

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23160 and BPHYT_RS23165 are separated by 32 nucleotidesBPHYT_RS23165 and BPHYT_RS23170 are separated by 971 nucleotides BPHYT_RS23160: BPHYT_RS23160 - Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data), at 762,109 to 763,443 _RS23160 BPHYT_RS23165: BPHYT_RS23165 - glutamine amidotransferase, at 763,476 to 764,270 _RS23165 BPHYT_RS23170: BPHYT_RS23170 - XRE family transcriptional regulator, at 765,242 to 765,793 _RS23170 Position (kb) 763 764 765Strain fitness (log2 ratio) -1 0 1 2at 762.734 kb on + strand, within BPHYT_RS23160at 762.734 kb on + strand, within BPHYT_RS23160at 762.948 kb on - strand, within BPHYT_RS23160at 763.447 kb on + strandat 764.979 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_DAP agar plate, outgrowth in LB_gent
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762,734 + BPHYT_RS23160 0.47 -0.0
762,734 + BPHYT_RS23160 0.47 -1.1
762,948 - BPHYT_RS23160 0.63 +2.0
763,447 + -0.8
764,979 - -0.4

Or see this region's nucleotide sequence