Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22055

Experiment: LB_DAP agar plate, outgrowth in LB_gent

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22050 and BPHYT_RS22055 are separated by 181 nucleotidesBPHYT_RS22055 and BPHYT_RS22060 are separated by 923 nucleotides BPHYT_RS22050: BPHYT_RS22050 - peptide ABC transporter substrate-binding protein, at 501,857 to 503,473 _RS22050 BPHYT_RS22055: BPHYT_RS22055 - DNA-binding protein, at 503,655 to 504,227 _RS22055 BPHYT_RS22060: BPHYT_RS22060 - amino acid transporter, at 505,151 to 506,692 _RS22060 Position (kb) 503 504 505Strain fitness (log2 ratio) -2 -1 0 1 2at 502.836 kb on + strand, within BPHYT_RS22050at 503.118 kb on + strand, within BPHYT_RS22050at 503.640 kb on + strandat 504.063 kb on - strand, within BPHYT_RS22055at 504.193 kb on - strandat 504.263 kb on + strandat 504.264 kb on - strandat 504.266 kb on - strandat 504.266 kb on - strandat 504.266 kb on - strandat 504.270 kb on - strandat 504.270 kb on - strandat 504.274 kb on - strandat 504.358 kb on - strandat 504.358 kb on - strandat 504.441 kb on - strandat 504.494 kb on - strandat 504.544 kb on - strandat 504.812 kb on + strandat 504.813 kb on - strandat 504.813 kb on - strandat 504.813 kb on - strandat 505.145 kb on + strandat 505.146 kb on - strandat 505.146 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_DAP agar plate, outgrowth in LB_gent
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502,836 + BPHYT_RS22050 0.61 +1.2
503,118 + BPHYT_RS22050 0.78 -2.0
503,640 + -1.7
504,063 - BPHYT_RS22055 0.71 +0.9
504,193 - +0.7
504,263 + -2.6
504,264 - +0.5
504,266 - -0.5
504,266 - -0.1
504,266 - -0.4
504,270 - -0.2
504,270 - +0.9
504,274 - +0.3
504,358 - -0.6
504,358 - +0.1
504,441 - -0.4
504,494 - +0.5
504,544 - +0.4
504,812 + -0.9
504,813 - +0.4
504,813 - -1.0
504,813 - +2.0
505,145 + -0.1
505,146 - +1.4
505,146 - +0.3

Or see this region's nucleotide sequence