Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14935

Experiment: LB_DAP agar plate, outgrowth in LB_gent

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS14930 and BPHYT_RS14935 are separated by 534 nucleotidesBPHYT_RS14935 and BPHYT_RS14940 are separated by 192 nucleotidesBPHYT_RS14940 and BPHYT_RS14945 are separated by 31 nucleotides BPHYT_RS14930: BPHYT_RS14930 - DNA gyrase subunit A, at 3,394,154 to 3,396,742 _RS14930 BPHYT_RS14935: BPHYT_RS14935 - membrane protein, at 3,397,277 to 3,397,924 _RS14935 BPHYT_RS14940: BPHYT_RS14940 - ubiquinone biosynthesis O-methyltransferase, at 3,398,117 to 3,398,815 _RS14940 BPHYT_RS14945: BPHYT_RS14945 - phosphoglycolate phosphatase, at 3,398,847 to 3,399,560 _RS14945 Position (kb) 3397 3398Strain fitness (log2 ratio) -2 -1 0 1at 3396.825 kb on - strandat 3396.825 kb on - strandat 3396.884 kb on - strandat 3396.918 kb on + strandat 3396.918 kb on + strandat 3396.918 kb on + strandat 3396.918 kb on + strandat 3396.924 kb on + strandat 3397.163 kb on + strandat 3397.195 kb on + strandat 3397.922 kb on + strandat 3397.973 kb on + strandat 3398.057 kb on - strandat 3398.057 kb on - strandat 3398.058 kb on + strandat 3398.058 kb on + strandat 3398.058 kb on + strandat 3398.059 kb on - strandat 3398.060 kb on + strandat 3398.837 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_DAP agar plate, outgrowth in LB_gent
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3,396,825 - +1.1
3,396,825 - -2.4
3,396,884 - +1.4
3,396,918 + +0.3
3,396,918 + -0.7
3,396,918 + +0.1
3,396,918 + +1.4
3,396,924 + +0.7
3,397,163 + -0.7
3,397,195 + -0.8
3,397,922 + -0.6
3,397,973 + +1.7
3,398,057 - -1.5
3,398,057 - +0.3
3,398,058 + -0.3
3,398,058 + +0.6
3,398,058 + -0.8
3,398,059 - -1.8
3,398,060 + +0.1
3,398,837 + +0.4

Or see this region's nucleotide sequence