Experiment: LB_DAP agar plate, outgrowth in LB_gent
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02720 and BPHYT_RS02725 are separated by 371 nucleotides BPHYT_RS02725 and BPHYT_RS02730 are separated by 101 nucleotides
BPHYT_RS02720: BPHYT_RS02720 - MarR family transcriptional regulator, at 609,345 to 610,271
_RS02720
BPHYT_RS02725: BPHYT_RS02725 - GntR family transcriptional regulator, at 610,643 to 611,377
_RS02725
BPHYT_RS02730: BPHYT_RS02730 - N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) <small>(from data)</small>, at 611,479 to 612,582
_RS02730
Position (kb) 610
611
612 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 609.691 kb on + strand, within BPHYT_RS02720 at 610.213 kb on + strand at 610.213 kb on + strand at 610.213 kb on + strand at 610.214 kb on - strand at 610.293 kb on + strand at 610.295 kb on + strand at 610.295 kb on + strand at 610.313 kb on + strand at 610.313 kb on + strand at 610.314 kb on - strand at 610.314 kb on - strand at 610.314 kb on - strand at 610.314 kb on - strand at 610.315 kb on + strand at 610.316 kb on - strand at 610.334 kb on - strand at 610.588 kb on + strand at 610.615 kb on - strand at 610.697 kb on + strand at 610.698 kb on - strand at 611.153 kb on + strand, within BPHYT_RS02725 at 611.154 kb on - strand, within BPHYT_RS02725 at 611.159 kb on + strand, within BPHYT_RS02725 at 611.159 kb on + strand, within BPHYT_RS02725 at 611.326 kb on + strand at 611.326 kb on + strand at 611.327 kb on - strand at 611.327 kb on - strand at 611.330 kb on + strand at 611.330 kb on + strand at 611.330 kb on + strand at 611.331 kb on - strand at 611.331 kb on - strand at 611.331 kb on - strand at 611.331 kb on - strand at 611.349 kb on - strand at 611.495 kb on + strand at 611.599 kb on + strand, within BPHYT_RS02730 at 611.600 kb on - strand, within BPHYT_RS02730 at 611.845 kb on + strand, within BPHYT_RS02730 at 611.846 kb on - strand, within BPHYT_RS02730 at 611.846 kb on - strand, within BPHYT_RS02730 at 611.917 kb on + strand, within BPHYT_RS02730 at 611.918 kb on - strand, within BPHYT_RS02730 at 612.040 kb on + strand, within BPHYT_RS02730 at 612.040 kb on + strand, within BPHYT_RS02730 at 612.040 kb on + strand, within BPHYT_RS02730 at 612.040 kb on + strand, within BPHYT_RS02730 at 612.241 kb on + strand, within BPHYT_RS02730 at 612.241 kb on + strand, within BPHYT_RS02730 at 612.242 kb on - strand, within BPHYT_RS02730 at 612.242 kb on - strand, within BPHYT_RS02730 at 612.242 kb on - strand, within BPHYT_RS02730 at 612.245 kb on + strand, within BPHYT_RS02730 at 612.246 kb on - strand, within BPHYT_RS02730
Per-strain Table
Position Strand Gene LocusTag Fraction LB_DAP agar plate, outgrowth in LB_gent remove 609,691 + BPHYT_RS02720 0.37 +0.6 610,213 + -0.7 610,213 + -1.8 610,213 + +0.0 610,214 - +0.5 610,293 + -4.7 610,295 + +0.4 610,295 + -1.8 610,313 + -0.2 610,313 + -0.8 610,314 - +0.1 610,314 - -0.9 610,314 - -0.3 610,314 - +2.2 610,315 + +1.1 610,316 - +1.4 610,334 - +0.4 610,588 + -1.2 610,615 - -2.6 610,697 + +0.5 610,698 - +0.6 611,153 + BPHYT_RS02725 0.69 -0.8 611,154 - BPHYT_RS02725 0.70 -0.8 611,159 + BPHYT_RS02725 0.70 -2.0 611,159 + BPHYT_RS02725 0.70 -0.8 611,326 + +0.1 611,326 + -0.2 611,327 - -1.5 611,327 - +0.1 611,330 + -0.7 611,330 + +1.1 611,330 + -0.4 611,331 - -0.7 611,331 - -0.7 611,331 - +0.8 611,331 - +2.4 611,349 - -0.4 611,495 + -1.2 611,599 + BPHYT_RS02730 0.11 -0.6 611,600 - BPHYT_RS02730 0.11 +0.2 611,845 + BPHYT_RS02730 0.33 -0.2 611,846 - BPHYT_RS02730 0.33 -0.1 611,846 - BPHYT_RS02730 0.33 -0.3 611,917 + BPHYT_RS02730 0.40 -0.5 611,918 - BPHYT_RS02730 0.40 -0.7 612,040 + BPHYT_RS02730 0.51 -2.6 612,040 + BPHYT_RS02730 0.51 -1.2 612,040 + BPHYT_RS02730 0.51 +3.0 612,040 + BPHYT_RS02730 0.51 -0.2 612,241 + BPHYT_RS02730 0.69 +0.2 612,241 + BPHYT_RS02730 0.69 -0.7 612,242 - BPHYT_RS02730 0.69 +0.0 612,242 - BPHYT_RS02730 0.69 -0.5 612,242 - BPHYT_RS02730 0.69 -0.4 612,245 + BPHYT_RS02730 0.69 +0.2 612,246 - BPHYT_RS02730 0.69 +0.4
Or see this region's nucleotide sequence