Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS02930

Experiment: LB_DAP agar plate, outgrowth in LB_gent

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS02920 and BPHYT_RS02925 overlap by 4 nucleotidesBPHYT_RS02925 and BPHYT_RS02930 overlap by 1 nucleotidesBPHYT_RS02930 and BPHYT_RS02935 are separated by 161 nucleotides BPHYT_RS02920: BPHYT_RS02920 - hypothetical protein, at 649,565 to 650,173 _RS02920 BPHYT_RS02925: BPHYT_RS02925 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, at 650,170 to 650,730 _RS02925 BPHYT_RS02930: BPHYT_RS02930 - KpsF/GutQ family protein, at 650,730 to 651,713 _RS02930 BPHYT_RS02935: BPHYT_RS02935 - potassium transporter, at 651,875 to 653,878 _RS02935 Position (kb) 650 651 652Strain fitness (log2 ratio) -2 -1 0 1at 651.107 kb on - strand, within BPHYT_RS02930at 651.107 kb on - strand, within BPHYT_RS02930at 651.723 kb on - strandat 651.724 kb on + strandat 651.724 kb on + strandat 651.724 kb on + strandat 651.856 kb on + strandat 651.857 kb on - strandat 652.324 kb on + strand, within BPHYT_RS02935at 652.464 kb on + strand, within BPHYT_RS02935at 652.465 kb on - strand, within BPHYT_RS02935

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_DAP agar plate, outgrowth in LB_gent
remove
651,107 - BPHYT_RS02930 0.38 -1.8
651,107 - BPHYT_RS02930 0.38 -1.6
651,723 - +0.4
651,724 + -1.9
651,724 + +0.4
651,724 + -1.8
651,856 + -0.1
651,857 - +1.0
652,324 + BPHYT_RS02935 0.22 +0.2
652,464 + BPHYT_RS02935 0.29 -0.3
652,465 - BPHYT_RS02935 0.29 +0.1

Or see this region's nucleotide sequence