Experiment: LB_DAP agar plate, outgrowth in LB_gent
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01710 and BPHYT_RS01715 overlap by 4 nucleotides BPHYT_RS01715 and BPHYT_RS01720 are separated by 88 nucleotides
BPHYT_RS01710: BPHYT_RS01710 - RND transporter, at 386,553 to 388,082
_RS01710
BPHYT_RS01715: BPHYT_RS01715 - RND transporter, at 388,079 to 389,284
_RS01715
BPHYT_RS01720: BPHYT_RS01720 - acriflavin resistance protein, at 389,373 to 392,555
_RS01720
Position (kb) 388
389
390 Strain fitness (log2 ratio) -1
0
1
2 at 387.392 kb on - strand, within BPHYT_RS01710 at 387.424 kb on + strand, within BPHYT_RS01710 at 387.925 kb on + strand, within BPHYT_RS01710 at 387.925 kb on + strand, within BPHYT_RS01710 at 387.925 kb on + strand, within BPHYT_RS01710 at 387.926 kb on - strand, within BPHYT_RS01710 at 387.926 kb on - strand, within BPHYT_RS01710 at 387.926 kb on - strand, within BPHYT_RS01710 at 387.958 kb on + strand at 387.959 kb on - strand at 388.206 kb on - strand, within BPHYT_RS01715 at 388.206 kb on - strand, within BPHYT_RS01715 at 388.415 kb on + strand, within BPHYT_RS01715 at 388.416 kb on - strand, within BPHYT_RS01715 at 388.563 kb on + strand, within BPHYT_RS01715 at 388.689 kb on + strand, within BPHYT_RS01715 at 388.690 kb on - strand, within BPHYT_RS01715 at 388.690 kb on - strand, within BPHYT_RS01715 at 389.116 kb on + strand, within BPHYT_RS01715 at 389.167 kb on + strand at 389.329 kb on + strand at 389.330 kb on - strand at 389.330 kb on - strand at 389.330 kb on - strand at 389.863 kb on + strand, within BPHYT_RS01720 at 389.863 kb on + strand, within BPHYT_RS01720 at 389.864 kb on - strand, within BPHYT_RS01720 at 389.864 kb on - strand, within BPHYT_RS01720 at 390.047 kb on + strand, within BPHYT_RS01720 at 390.071 kb on - strand, within BPHYT_RS01720 at 390.211 kb on - strand, within BPHYT_RS01720 at 390.217 kb on + strand, within BPHYT_RS01720
Per-strain Table
Position Strand Gene LocusTag Fraction LB_DAP agar plate, outgrowth in LB_gent remove 387,392 - BPHYT_RS01710 0.55 -0.9 387,424 + BPHYT_RS01710 0.57 -0.1 387,925 + BPHYT_RS01710 0.90 +0.3 387,925 + BPHYT_RS01710 0.90 -0.0 387,925 + BPHYT_RS01710 0.90 +0.3 387,926 - BPHYT_RS01710 0.90 -0.6 387,926 - BPHYT_RS01710 0.90 +0.4 387,926 - BPHYT_RS01710 0.90 +0.3 387,958 + +0.6 387,959 - +0.6 388,206 - BPHYT_RS01715 0.11 -0.0 388,206 - BPHYT_RS01715 0.11 -0.3 388,415 + BPHYT_RS01715 0.28 +1.8 388,416 - BPHYT_RS01715 0.28 +0.4 388,563 + BPHYT_RS01715 0.40 +0.1 388,689 + BPHYT_RS01715 0.51 -0.1 388,690 - BPHYT_RS01715 0.51 +0.6 388,690 - BPHYT_RS01715 0.51 +0.1 389,116 + BPHYT_RS01715 0.86 +0.0 389,167 + +0.6 389,329 + -0.3 389,330 - -0.3 389,330 - +1.1 389,330 - -0.6 389,863 + BPHYT_RS01720 0.15 +0.9 389,863 + BPHYT_RS01720 0.15 +0.3 389,864 - BPHYT_RS01720 0.15 -0.2 389,864 - BPHYT_RS01720 0.15 +1.4 390,047 + BPHYT_RS01720 0.21 -0.4 390,071 - BPHYT_RS01720 0.22 +1.2 390,211 - BPHYT_RS01720 0.26 +0.9 390,217 + BPHYT_RS01720 0.27 +0.6
Or see this region's nucleotide sequence