Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30905

Experiment: LB_DAP agar plate, outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS30900 and BPHYT_RS30905 overlap by 23 nucleotidesBPHYT_RS30905 and BPHYT_RS30910 overlap by 4 nucleotides BPHYT_RS30900: BPHYT_RS30900 - transcriptional regulator, at 2,485,818 to 2,486,450 _RS30900 BPHYT_RS30905: BPHYT_RS30905 - histidine kinase, at 2,486,428 to 2,488,089 _RS30905 BPHYT_RS30910: BPHYT_RS30910 - histidine kinase, at 2,488,086 to 2,490,251 _RS30910 Position (kb) 2486 2487 2488 2489Strain fitness (log2 ratio) -2 -1 0 1 2at 2485.600 kb on - strandat 2485.984 kb on - strand, within BPHYT_RS30900at 2485.987 kb on - strand, within BPHYT_RS30900at 2486.150 kb on - strand, within BPHYT_RS30900at 2486.984 kb on - strand, within BPHYT_RS30905at 2487.321 kb on - strand, within BPHYT_RS30905at 2487.746 kb on + strand, within BPHYT_RS30905at 2488.148 kb on - strandat 2488.823 kb on + strand, within BPHYT_RS30910

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_DAP agar plate, outgrowth in LB
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2,485,600 - +0.8
2,485,984 - BPHYT_RS30900 0.26 -0.1
2,485,987 - BPHYT_RS30900 0.27 -0.7
2,486,150 - BPHYT_RS30900 0.52 -2.0
2,486,984 - BPHYT_RS30905 0.33 +0.1
2,487,321 - BPHYT_RS30905 0.54 +2.2
2,487,746 + BPHYT_RS30905 0.79 +0.8
2,488,148 - -0.2
2,488,823 + BPHYT_RS30910 0.34 +0.3

Or see this region's nucleotide sequence