Experiment: LB_DAP agar plate, outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23805 and BPHYT_RS23810 are separated by 188 nucleotides BPHYT_RS23810 and BPHYT_RS23815 are separated by 226 nucleotides BPHYT_RS23815 and BPHYT_RS23820 are separated by 202 nucleotides
BPHYT_RS23805: BPHYT_RS23805 - 23S ribosomal RNA, at 906,535 to 909,437
_RS23805
BPHYT_RS23810: BPHYT_RS23810 - 5S ribosomal RNA, at 909,626 to 909,739
_RS23810
BPHYT_RS23815: BPHYT_RS23815 - LysR family transcriptional regulator, at 909,966 to 910,961
_RS23815
BPHYT_RS23820: BPHYT_RS23820 - fusaric acid resistance protein, at 911,164 to 913,332
_RS23820
Position (kb) 909
910
911 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 909.804 kb on + strand at 909.979 kb on - strand at 910.240 kb on - strand, within BPHYT_RS23815 at 910.448 kb on - strand, within BPHYT_RS23815 at 910.550 kb on + strand, within BPHYT_RS23815 at 910.645 kb on + strand, within BPHYT_RS23815 at 910.747 kb on - strand, within BPHYT_RS23815 at 910.754 kb on + strand, within BPHYT_RS23815 at 910.755 kb on - strand, within BPHYT_RS23815 at 910.755 kb on - strand, within BPHYT_RS23815 at 910.755 kb on - strand, within BPHYT_RS23815 at 910.755 kb on - strand, within BPHYT_RS23815 at 910.755 kb on - strand, within BPHYT_RS23815 at 910.944 kb on - strand at 910.956 kb on - strand at 910.971 kb on + strand at 910.971 kb on + strand at 910.972 kb on - strand at 910.990 kb on + strand at 911.058 kb on - strand at 911.068 kb on + strand at 911.068 kb on + strand at 911.079 kb on + strand at 911.079 kb on + strand at 911.080 kb on - strand at 911.080 kb on - strand at 911.503 kb on + strand, within BPHYT_RS23820 at 911.504 kb on - strand, within BPHYT_RS23820 at 911.504 kb on - strand, within BPHYT_RS23820 at 911.504 kb on - strand, within BPHYT_RS23820 at 911.504 kb on - strand, within BPHYT_RS23820 at 911.515 kb on - strand, within BPHYT_RS23820 at 911.693 kb on + strand, within BPHYT_RS23820
Per-strain Table
Position Strand Gene LocusTag Fraction LB_DAP agar plate, outgrowth in LB remove 909,804 + -0.1 909,979 - -0.9 910,240 - BPHYT_RS23815 0.28 +1.3 910,448 - BPHYT_RS23815 0.48 +1.1 910,550 + BPHYT_RS23815 0.59 +0.5 910,645 + BPHYT_RS23815 0.68 +0.8 910,747 - BPHYT_RS23815 0.78 +0.1 910,754 + BPHYT_RS23815 0.79 +1.1 910,755 - BPHYT_RS23815 0.79 +1.7 910,755 - BPHYT_RS23815 0.79 +0.1 910,755 - BPHYT_RS23815 0.79 +2.7 910,755 - BPHYT_RS23815 0.79 +0.6 910,755 - BPHYT_RS23815 0.79 -0.5 910,944 - -0.3 910,956 - -2.9 910,971 + +0.7 910,971 + -0.2 910,972 - +0.8 910,990 + +0.7 911,058 - +1.5 911,068 + +0.3 911,068 + -0.5 911,079 + -0.5 911,079 + -0.0 911,080 - +0.2 911,080 - -0.4 911,503 + BPHYT_RS23820 0.16 -0.6 911,504 - BPHYT_RS23820 0.16 -0.9 911,504 - BPHYT_RS23820 0.16 +0.5 911,504 - BPHYT_RS23820 0.16 -0.2 911,504 - BPHYT_RS23820 0.16 +0.7 911,515 - BPHYT_RS23820 0.16 -0.3 911,693 + BPHYT_RS23820 0.24 +0.4
Or see this region's nucleotide sequence