Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS04510

Experiment: L-Carnitine 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Carnitine 10 mM (C)
1,008,163	+				+0.1
1,008,164	-				-1.6
1,008,232	+		PFLU_RS04500	0.10	+0.3
1,008,233	-		PFLU_RS04500	0.10	+0.1
1,008,342	+		PFLU_RS04500	0.33	+1.4
1,008,343	-		PFLU_RS04500	0.33	+0.3
1,008,343	-		PFLU_RS04500	0.33	-0.6
1,008,507	+		PFLU_RS04500	0.67	-0.0
1,008,507	+		PFLU_RS04500	0.67	-0.4
1,008,507	+		PFLU_RS04500	0.67	+0.7
1,008,507	+		PFLU_RS04500	0.67	-0.9
1,008,507	+		PFLU_RS04500	0.67	+1.3
1,008,507	+		PFLU_RS04500	0.67	+0.7
1,008,507	+		PFLU_RS04500	0.67	+0.4
1,008,507	+		PFLU_RS04500	0.67	+0.7
1,008,507	+		PFLU_RS04500	0.67	-0.3
1,008,507	+		PFLU_RS04500	0.67	+0.5
1,008,508	-		PFLU_RS04500	0.67	+0.2
1,008,508	-		PFLU_RS04500	0.67	-1.0
1,008,508	-		PFLU_RS04500	0.67	-0.1
1,008,508	-		PFLU_RS04500	0.67	+0.3
1,008,508	-		PFLU_RS04500	0.67	-0.1
1,008,508	-		PFLU_RS04500	0.67	-0.2
1,008,508	-		PFLU_RS04500	0.67	-0.5
1,008,508	-		PFLU_RS04500	0.67	+0.3
1,008,508	-		PFLU_RS04500	0.67	-0.5
1,008,508	-		PFLU_RS04500	0.67	+1.2
1,008,508	-		PFLU_RS04500	0.67	-0.3
1,008,508	-		PFLU_RS04500	0.67	+0.1
1,008,540	+		PFLU_RS04500	0.73	+0.3
1,008,594	+		PFLU_RS04500	0.85	+0.7
1,008,594	+		PFLU_RS04500	0.85	+0.2
1,008,594	+		PFLU_RS04500	0.85	+0.4
1,008,594	+		PFLU_RS04500	0.85	-0.2
1,008,594	+		PFLU_RS04500	0.85	-0.6
1,008,594	+		PFLU_RS04500	0.85	+0.7
1,008,594	+		PFLU_RS04500	0.85	+1.4
1,008,594	+		PFLU_RS04500	0.85	+0.2
1,008,594	+		PFLU_RS04500	0.85	+1.7
1,008,594	+		PFLU_RS04500	0.85	-0.7
1,008,594	+		PFLU_RS04500	0.85	-0.3
1,008,594	+		PFLU_RS04500	0.85	+0.2
1,008,594	+		PFLU_RS04500	0.85	-0.1
1,008,594	+		PFLU_RS04500	0.85	+1.4
1,008,594	+		PFLU_RS04500	0.85	+0.2
1,008,594	+		PFLU_RS04500	0.85	-1.4
1,008,594	+		PFLU_RS04500	0.85	+0.0
1,008,594	+		PFLU_RS04500	0.85	+0.3
1,008,594	+		PFLU_RS04500	0.85	-1.3
1,008,594	+		PFLU_RS04500	0.85	+1.3
1,008,594	+		PFLU_RS04500	0.85	-2.1
1,008,594	+		PFLU_RS04500	0.85	+0.3
1,008,594	+		PFLU_RS04500	0.85	+0.5
1,008,595	-		PFLU_RS04500	0.85	+0.2
1,008,595	-		PFLU_RS04500	0.85	-1.3
1,008,595	-		PFLU_RS04500	0.85	-0.2
1,008,595	-		PFLU_RS04500	0.85	-1.0
1,008,595	-		PFLU_RS04500	0.85	-1.4
1,008,595	-		PFLU_RS04500	0.85	-1.0
1,008,595	-		PFLU_RS04500	0.85	+1.0
1,008,595	-		PFLU_RS04500	0.85	+0.7
1,008,595	-		PFLU_RS04500	0.85	-0.1
1,008,595	-		PFLU_RS04500	0.85	-0.9
1,008,595	-		PFLU_RS04500	0.85	-0.3
1,008,595	-		PFLU_RS04500	0.85	+0.4
1,008,595	-		PFLU_RS04500	0.85	+0.0
1,008,595	-		PFLU_RS04500	0.85	+0.4
1,008,595	-		PFLU_RS04500	0.85	+0.3
1,008,595	-		PFLU_RS04500	0.85	+1.4
1,008,595	-		PFLU_RS04500	0.85	+0.7
1,008,595	-		PFLU_RS04500	0.85	-0.1
1,008,595	-		PFLU_RS04500	0.85	+1.0
1,008,595	-		PFLU_RS04500	0.85	-0.7
1,008,595	-		PFLU_RS04500	0.85	-1.6
1,008,595	-		PFLU_RS04500	0.85	+0.3
1,008,595	-		PFLU_RS04500	0.85	-0.4
1,008,595	-		PFLU_RS04500	0.85	+0.7
1,008,595	-		PFLU_RS04500	0.85	+0.1
1,008,595	-		PFLU_RS04500	0.85	+0.7
1,008,595	-		PFLU_RS04500	0.85	-2.8
1,008,595	-		PFLU_RS04500	0.85	+0.7
1,008,595	-		PFLU_RS04500	0.85	-0.0
1,008,595	-		PFLU_RS04500	0.85	+0.4
1,008,595	-		PFLU_RS04500	0.85	+0.7
1,008,595	-		PFLU_RS04500	0.85	-1.6
1,008,595	-		PFLU_RS04500	0.85	+1.3
1,008,595	-		PFLU_RS04500	0.85	+0.9
1,008,595	-		PFLU_RS04500	0.85	+0.9
1,008,595	-		PFLU_RS04500	0.85	+0.5
1,008,612	+		PFLU_RS04500	0.88	-0.3
1,008,612	+		PFLU_RS04500	0.88	+0.5
1,008,612	+		PFLU_RS04500	0.88	-0.1
1,008,612	+		PFLU_RS04500	0.88	-0.8
1,008,612	+		PFLU_RS04500	0.88	+0.7
1,008,612	+		PFLU_RS04500	0.88	+0.5
1,008,613	-		PFLU_RS04500	0.88	-0.5
1,008,613	-		PFLU_RS04500	0.88	-0.5
1,008,626	+				-0.9
1,008,626	+				-0.5
1,008,627	-				-0.9
1,008,627	-				+0.0
1,008,627	-				+0.2
1,008,627	-				+0.4
1,008,659	+				+0.5
1,008,660	-				-0.5
1,008,660	-				+0.1
1,008,667	-				-0.8
1,008,667	-				-0.0
1,008,667	-				-1.0
1,008,686	+				+0.3
1,008,686	+				+0.1
1,008,686	+				+0.9
1,008,687	-				+0.9
1,008,687	-				+1.1
1,008,687	-				+0.7
1,008,687	-				-0.9
1,008,755	+				-2.3
1,008,755	+				+1.1
1,008,755	+				-0.6
1,008,755	+				+0.7
1,008,755	+				+0.1
1,008,755	+				+0.4
1,008,755	+				-1.1
1,008,756	-				-0.5
1,008,756	-				-1.5
1,008,756	-				-1.6
1,008,756	-				+0.2
1,008,756	-				+2.6
1,008,756	-				-2.0
1,008,773	+				+1.1
1,008,773	+				+0.7
1,008,773	+				+0.4
1,008,773	+				-0.3
1,008,774	-				-0.9
1,008,774	-				-0.5
1,008,774	-				-0.9
1,008,805	-				+1.3
1,008,805	-				-1.6
1,008,805	-				+0.7
1,008,810	+				+1.0
1,008,811	-				-0.8
1,008,811	-				-0.7
1,008,811	-				+0.5
1,008,919	+		PFLU_RS04505	0.42	+0.1
1,008,920	-		PFLU_RS04505	0.42	-0.3
1,008,933	+		PFLU_RS04505	0.47	-0.4
1,009,054	+		PFLU_RS04505	0.89	-1.0
1,009,054	+		PFLU_RS04505	0.89	+0.1
1,009,054	+		PFLU_RS04505	0.89	+0.7
1,009,054	+		PFLU_RS04505	0.89	+0.4
1,009,054	+		PFLU_RS04505	0.89	-0.5
1,009,054	+		PFLU_RS04505	0.89	-0.2
1,009,055	-		PFLU_RS04505	0.89	-0.3
1,009,055	-		PFLU_RS04505	0.89	+1.0
1,009,055	-		PFLU_RS04505	0.89	-0.9
1,009,055	-		PFLU_RS04505	0.89	+0.7
1,009,055	-		PFLU_RS04505	0.89	+1.4
1,009,099	+				-0.3
1,009,100	-				-0.2
1,009,100	-				+0.1
1,009,100	-				-0.6
1,009,141	+				-0.3
1,009,142	-				-1.3
1,009,163	+				+1.7
1,009,163	+				+2.3
1,009,163	+				+1.0
1,009,163	+				-0.4
1,009,163	+				-0.7
1,009,163	+				+0.2
1,009,163	+				-2.0
1,009,163	+				-0.7
1,009,163	+				+1.1
1,009,163	+				-1.0
1,009,163	+				+2.7
1,009,164	-				-1.3
1,009,164	-				+0.4
1,009,164	-				+0.4
1,009,164	-				+0.3
1,009,164	-				-0.0
1,009,164	-				+1.3
1,009,164	-				+1.3
1,009,164	-				+0.3
1,009,164	-				-1.6
1,009,164	-				+1.1
1,009,164	-				+0.1
1,010,635	+				+0.7
1,010,667	-				-0.3
1,010,827	+				-0.3
1,010,827	+				-0.3
1,010,827	+				+0.7
1,010,827	+				+2.3
1,010,827	+				+0.7
1,010,827	+				-2.1
1,010,828	-				+0.5
1,010,828	-				+1.0
1,010,828	-				-0.3
1,010,828	-				+0.9
1,010,864	+				-1.9
1,010,864	+				+1.4
1,010,864	+				-1.9
1,010,865	-				-0.9
1,010,865	-				-0.0
1,010,865	-				+0.5
1,010,865	-				-1.4
1,010,865	-				-1.6
1,010,933	+				+1.6
1,010,933	+				+1.3
1,010,934	-				-0.8
1,010,934	-				+0.6
1,010,980	+				-0.3
1,010,980	+				-0.5
1,010,980	+				+0.7
1,010,980	+				+0.3
1,010,980	+				+0.2
1,010,980	+				+1.4
1,010,980	+				+0.5
1,010,980	+				+0.2
1,010,980	+				+0.2
1,010,981	-				-1.1
1,010,981	-				-1.0
1,010,981	-				-1.1
1,010,981	-				-1.2
1,010,981	-				+0.4
1,010,981	-				-1.0
1,010,981	-				+0.0
1,010,981	-				-0.5
1,010,981	-				-0.2
1,010,981	-				+0.7
1,010,981	-				-1.0
1,010,981	-				-0.3
1,010,981	-				-0.3
1,010,981	-				+0.4
1,010,981	-				-1.3
1,010,981	-				-0.7
1,010,981	-				-0.0
1,010,981	-				+0.7
1,010,981	-				-1.1
1,010,994	+				-0.1
1,010,994	+				-0.3
1,010,995	-				-0.3
1,010,995	-				-0.5
1,010,995	-				+1.3
1,010,995	-				+0.5
1,010,995	-				+1.1
1,010,995	-				-2.6
1,011,105	+		PFLU_RS31405	0.14	+0.6
1,011,105	+		PFLU_RS31405	0.14	-0.6
1,011,179	+		PFLU_RS31405	0.37	+0.2
1,011,179	+		PFLU_RS31405	0.37	-1.6
1,011,266	+		PFLU_RS31405	0.64	+1.0
1,011,266	+		PFLU_RS31405	0.64	-1.6
1,011,266	+		PFLU_RS31405	0.64	-0.8
1,011,267	-		PFLU_RS31405	0.64	-1.6
1,011,315	+		PFLU_RS31405	0.79	-0.1
1,011,315	+		PFLU_RS31405	0.79	+0.1
1,011,315	+		PFLU_RS31405	0.79	+0.7
1,011,315	+		PFLU_RS31405	0.79	-0.9
1,011,315	+		PFLU_RS31405	0.79	+1.7
1,011,315	+		PFLU_RS31405	0.79	+2.0
1,011,315	+		PFLU_RS31405	0.79	-0.1
1,011,315	+		PFLU_RS31405	0.79	-1.5
1,011,315	+		PFLU_RS31405	0.79	+1.7
1,011,315	+		PFLU_RS31405	0.79	+0.4
1,011,315	+		PFLU_RS31405	0.79	+0.7
1,011,315	+		PFLU_RS31405	0.79	-1.3
1,011,315	+		PFLU_RS31405	0.79	+0.8
1,011,315	+		PFLU_RS31405	0.79	+0.7
1,011,315	+		PFLU_RS31405	0.79	-1.3
1,011,315	+		PFLU_RS31405	0.79	-0.4
1,011,316	-		PFLU_RS31405	0.80	-0.4
1,011,316	-		PFLU_RS31405	0.80	+0.9
1,011,316	-		PFLU_RS31405	0.80	+0.5
1,011,316	-		PFLU_RS31405	0.80	-0.3
1,011,316	-		PFLU_RS31405	0.80	-0.4
1,011,316	-		PFLU_RS31405	0.80	-0.2
1,011,316	-		PFLU_RS31405	0.80	+0.1
1,011,316	-		PFLU_RS31405	0.80	-0.6
1,011,316	-		PFLU_RS31405	0.80	-2.4
1,011,316	-		PFLU_RS31405	0.80	-0.4
1,011,317	+		PFLU_RS31405	0.80	-0.6
1,011,317	+		PFLU_RS31405	0.80	+0.9
1,011,317	+		PFLU_RS31405	0.80	+0.9
1,011,318	-		PFLU_RS31405	0.80	-0.0
1,011,318	-		PFLU_RS31405	0.80	-0.7
1,011,334	+		PFLU_RS31405	0.85	+0.7
1,011,335	-		PFLU_RS31405	0.86	-0.9
1,011,335	-		PFLU_RS31405	0.86	+1.2
1,011,335	-		PFLU_RS31405	0.86	-0.5
1,011,367	-				+0.5
1,011,375	+				-1.5
1,011,376	-				+0.2
1,011,376	-				-1.3
1,011,378	+				-0.6
1,011,512	+		PFLU_RS04515	0.53	+0.7
1,011,512	+		PFLU_RS04515	0.53	-0.6
1,011,512	+		PFLU_RS04515	0.53	-2.2
1,011,512	+		PFLU_RS04515	0.53	+0.5
1,011,512	+		PFLU_RS04515	0.53	+1.3
1,011,513	-		PFLU_RS04515	0.53	-0.4
1,011,513	-		PFLU_RS04515	0.53	-0.2
1,011,513	-		PFLU_RS04515	0.53	+0.4
1,011,513	-		PFLU_RS04515	0.53	-0.6
1,011,513	-		PFLU_RS04515	0.53	+0.7
1,011,513	-		PFLU_RS04515	0.53	+1.3
1,011,513	-		PFLU_RS04515	0.53	-0.8
1,011,513	-		PFLU_RS04515	0.53	-0.5
1,011,513	-		PFLU_RS04515	0.53	+0.1
1,011,513	-		PFLU_RS04515	0.53	-2.3
1,011,513	-		PFLU_RS04515	0.53	+0.1
1,011,513	-		PFLU_RS04515	0.53	-0.3
1,011,513	-		PFLU_RS04515	0.53	+0.2
1,011,513	-		PFLU_RS04515	0.53	+0.3
1,011,573	+		PFLU_RS04515	0.79	+0.5
1,011,573	+		PFLU_RS04515	0.79	+0.7
1,011,574	-		PFLU_RS04515	0.79	-0.9
1,011,574	-		PFLU_RS04515	0.79	-1.0
1,011,574	-		PFLU_RS04515	0.79	+0.3
1,011,574	-		PFLU_RS04515	0.79	-0.0