Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS24025

Experiment: Acanthamoeba sp., muxed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS24020 and BWI76_RS24025 are separated by 133 nucleotidesBWI76_RS24025 and BWI76_RS24030 are separated by 211 nucleotides BWI76_RS24020: BWI76_RS24020 - peptidase M48, at 5,013,336 to 5,014,094 _RS24020 BWI76_RS24025: BWI76_RS24025 - agmatinase, at 5,014,228 to 5,015,148 _RS24025 BWI76_RS24030: BWI76_RS24030 - arginine decarboxylase, at 5,015,360 to 5,017,336 _RS24030 Position (kb) 5014 5015 5016Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5013.231 kb on - strandat 5013.271 kb on + strandat 5013.271 kb on + strandat 5013.271 kb on + strandat 5013.271 kb on + strandat 5013.271 kb on + strandat 5013.271 kb on + strandat 5013.279 kb on - strandat 5013.416 kb on + strand, within BWI76_RS24020at 5013.592 kb on - strand, within BWI76_RS24020at 5013.612 kb on - strand, within BWI76_RS24020at 5013.614 kb on + strand, within BWI76_RS24020at 5013.629 kb on + strand, within BWI76_RS24020at 5013.746 kb on + strand, within BWI76_RS24020at 5013.867 kb on + strand, within BWI76_RS24020at 5014.053 kb on - strandat 5014.055 kb on + strandat 5014.061 kb on - strandat 5014.135 kb on + strandat 5014.135 kb on + strandat 5014.152 kb on + strandat 5014.443 kb on + strand, within BWI76_RS24025at 5014.495 kb on + strand, within BWI76_RS24025at 5014.605 kb on - strand, within BWI76_RS24025at 5014.643 kb on + strand, within BWI76_RS24025at 5014.643 kb on + strand, within BWI76_RS24025at 5014.643 kb on + strand, within BWI76_RS24025at 5014.651 kb on - strand, within BWI76_RS24025at 5014.891 kb on - strand, within BWI76_RS24025at 5015.150 kb on + strandat 5015.644 kb on + strand, within BWI76_RS24030at 5016.002 kb on - strand, within BWI76_RS24030at 5016.088 kb on - strand, within BWI76_RS24030

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2
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5,013,231 - -0.4
5,013,271 + -1.1
5,013,271 + -0.4
5,013,271 + -1.8
5,013,271 + +1.3
5,013,271 + -0.6
5,013,271 + +0.3
5,013,279 - -0.4
5,013,416 + BWI76_RS24020 0.11 +2.7
5,013,592 - BWI76_RS24020 0.34 +2.4
5,013,612 - BWI76_RS24020 0.36 +0.6
5,013,614 + BWI76_RS24020 0.37 +0.2
5,013,629 + BWI76_RS24020 0.39 -0.5
5,013,746 + BWI76_RS24020 0.54 +0.3
5,013,867 + BWI76_RS24020 0.70 -0.3
5,014,053 - -1.3
5,014,055 + -0.7
5,014,061 - +3.3
5,014,135 + -0.3
5,014,135 + -0.9
5,014,152 + +0.6
5,014,443 + BWI76_RS24025 0.23 -1.0
5,014,495 + BWI76_RS24025 0.29 -0.1
5,014,605 - BWI76_RS24025 0.41 -3.2
5,014,643 + BWI76_RS24025 0.45 -1.6
5,014,643 + BWI76_RS24025 0.45 -1.5
5,014,643 + BWI76_RS24025 0.45 -0.5
5,014,651 - BWI76_RS24025 0.46 -2.3
5,014,891 - BWI76_RS24025 0.72 -1.2
5,015,150 + -0.5
5,015,644 + BWI76_RS24030 0.14 +0.3
5,016,002 - BWI76_RS24030 0.32 +0.4
5,016,088 - BWI76_RS24030 0.37 +1.7

Or see this region's nucleotide sequence