Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS24025
Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Acanthamoeba sp., muxed culture-2 |
---|---|---|---|---|---|
remove | |||||
5,013,231 | - | -0.4 | |||
5,013,271 | + | -1.1 | |||
5,013,271 | + | -0.4 | |||
5,013,271 | + | -1.8 | |||
5,013,271 | + | +1.3 | |||
5,013,271 | + | -0.6 | |||
5,013,271 | + | +0.3 | |||
5,013,279 | - | -0.4 | |||
5,013,416 | + | BWI76_RS24020 | 0.11 | +2.7 | |
5,013,592 | - | BWI76_RS24020 | 0.34 | +2.4 | |
5,013,612 | - | BWI76_RS24020 | 0.36 | +0.6 | |
5,013,614 | + | BWI76_RS24020 | 0.37 | +0.2 | |
5,013,629 | + | BWI76_RS24020 | 0.39 | -0.5 | |
5,013,746 | + | BWI76_RS24020 | 0.54 | +0.3 | |
5,013,867 | + | BWI76_RS24020 | 0.70 | -0.3 | |
5,014,053 | - | -1.3 | |||
5,014,055 | + | -0.7 | |||
5,014,061 | - | +3.3 | |||
5,014,135 | + | -0.3 | |||
5,014,135 | + | -0.9 | |||
5,014,152 | + | +0.6 | |||
5,014,443 | + | BWI76_RS24025 | 0.23 | -1.0 | |
5,014,495 | + | BWI76_RS24025 | 0.29 | -0.1 | |
5,014,605 | - | BWI76_RS24025 | 0.41 | -3.2 | |
5,014,643 | + | BWI76_RS24025 | 0.45 | -1.6 | |
5,014,643 | + | BWI76_RS24025 | 0.45 | -1.5 | |
5,014,643 | + | BWI76_RS24025 | 0.45 | -0.5 | |
5,014,651 | - | BWI76_RS24025 | 0.46 | -2.3 | |
5,014,891 | - | BWI76_RS24025 | 0.72 | -1.2 | |
5,015,150 | + | -0.5 | |||
5,015,644 | + | BWI76_RS24030 | 0.14 | +0.3 | |
5,016,002 | - | BWI76_RS24030 | 0.32 | +0.4 | |
5,016,088 | - | BWI76_RS24030 | 0.37 | +1.7 |
Or see this region's nucleotide sequence