Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23940 and BWI76_RS23945 are separated by 10 nucleotides BWI76_RS23945 and BWI76_RS23950 are separated by 24 nucleotides
BWI76_RS23935: BWI76_RS23935 - methylmalonyl-CoA mutase, at 4,994,947 to 4,997,091
_RS23935
BWI76_RS23940: BWI76_RS23940 - ATPase/protein kinase, at 4,997,084 to 4,998,079
_RS23940
BWI76_RS23945: BWI76_RS23945 - methylmalonyl-CoA decarboxylase, at 4,998,090 to 4,998,875
_RS23945
BWI76_RS23950: BWI76_RS23950 - succinate CoA transferase, at 4,998,900 to 5,000,366
_RS23950
Position (kb) 4998
4999 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4997.148 kb on - strand at 4997.426 kb on + strand, within BWI76_RS23940 at 4997.519 kb on + strand, within BWI76_RS23940 at 4997.519 kb on + strand, within BWI76_RS23940 at 4997.701 kb on - strand, within BWI76_RS23940 at 4997.701 kb on - strand, within BWI76_RS23940 at 4997.947 kb on + strand, within BWI76_RS23940 at 4998.334 kb on - strand, within BWI76_RS23945 at 4998.407 kb on + strand, within BWI76_RS23945 at 4998.806 kb on - strand at 4998.891 kb on - strand at 4998.891 kb on - strand at 4998.891 kb on - strand at 4999.206 kb on - strand, within BWI76_RS23950 at 4999.466 kb on + strand, within BWI76_RS23950 at 4999.603 kb on + strand, within BWI76_RS23950 at 4999.746 kb on - strand, within BWI76_RS23950 at 4999.746 kb on - strand, within BWI76_RS23950 at 4999.850 kb on - strand, within BWI76_RS23950 at 4999.873 kb on + strand, within BWI76_RS23950
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2 remove 4,997,148 - +1.1 4,997,426 + BWI76_RS23940 0.34 +0.9 4,997,519 + BWI76_RS23940 0.44 +0.4 4,997,519 + BWI76_RS23940 0.44 +0.2 4,997,701 - BWI76_RS23940 0.62 -0.0 4,997,701 - BWI76_RS23940 0.62 +4.2 4,997,947 + BWI76_RS23940 0.87 -0.6 4,998,334 - BWI76_RS23945 0.31 +0.3 4,998,407 + BWI76_RS23945 0.40 +1.0 4,998,806 - -1.8 4,998,891 - -1.1 4,998,891 - -0.0 4,998,891 - -0.3 4,999,206 - BWI76_RS23950 0.21 -1.7 4,999,466 + BWI76_RS23950 0.39 -0.4 4,999,603 + BWI76_RS23950 0.48 -1.0 4,999,746 - BWI76_RS23950 0.58 +1.3 4,999,746 - BWI76_RS23950 0.58 -0.7 4,999,850 - BWI76_RS23950 0.65 -0.2 4,999,873 + BWI76_RS23950 0.66 -0.7
Or see this region's nucleotide sequence