Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS22795

Experiment: Acanthamoeba sp., muxed culture-2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS22790 and BWI76_RS22795 are separated by 80 nucleotidesBWI76_RS22795 and BWI76_RS22800 are separated by 227 nucleotides BWI76_RS22790: BWI76_RS22790 - phosphopyruvate hydratase, at 4,750,656 to 4,751,954 _RS22790 BWI76_RS22795: BWI76_RS22795 - CTP synthetase, at 4,752,035 to 4,753,672 _RS22795 BWI76_RS22800: BWI76_RS22800 - nucleoside triphosphate pyrophosphohydrolase, at 4,753,900 to 4,754,691 _RS22800 Position (kb) 4752 4753 4754Strain fitness (log2 ratio) -3 -2 -1 0 1at 4753.793 kb on + strandat 4753.793 kb on + strandat 4753.964 kb on - strandat 4754.343 kb on + strand, within BWI76_RS22800at 4754.483 kb on + strand, within BWI76_RS22800at 4754.495 kb on + strand, within BWI76_RS22800at 4754.495 kb on + strand, within BWI76_RS22800at 4754.512 kb on + strand, within BWI76_RS22800at 4754.563 kb on - strand, within BWI76_RS22800at 4754.565 kb on + strand, within BWI76_RS22800at 4754.573 kb on - strand, within BWI76_RS22800at 4754.648 kb on + strandat 4754.666 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2
remove
4,753,793 + -0.3
4,753,793 + +0.8
4,753,964 - -0.1
4,754,343 + BWI76_RS22800 0.56 +1.0
4,754,483 + BWI76_RS22800 0.74 -0.8
4,754,495 + BWI76_RS22800 0.75 +1.1
4,754,495 + BWI76_RS22800 0.75 -0.4
4,754,512 + BWI76_RS22800 0.77 -1.2
4,754,563 - BWI76_RS22800 0.84 -3.0
4,754,565 + BWI76_RS22800 0.84 -0.5
4,754,573 - BWI76_RS22800 0.85 -0.3
4,754,648 + -0.6
4,754,666 - +0.4

Or see this region's nucleotide sequence