Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22625 and BWI76_RS22630 overlap by 4 nucleotides BWI76_RS22630 and BWI76_RS22635 are separated by 107 nucleotides BWI76_RS22635 and BWI76_RS22640 overlap by 4 nucleotides BWI76_RS22640 and BWI76_RS22645 are separated by 65 nucleotides
BWI76_RS22625: BWI76_RS22625 - transcriptional regulator, at 4,717,038 to 4,717,457
_RS22625
BWI76_RS22630: BWI76_RS22630 - LysR family transcriptional regulator, at 4,717,454 to 4,718,341
_RS22630
BWI76_RS22635: BWI76_RS22635 - MFS transporter, at 4,718,449 to 4,719,663
_RS22635
BWI76_RS22640: BWI76_RS22640 - hypothetical protein, at 4,719,660 to 4,720,037
_RS22640
BWI76_RS22645: BWI76_RS22645 - RNA polymerase sigma factor RpoS, at 4,720,103 to 4,721,095
_RS22645
Position (kb) 4718
4719
4720 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4717.503 kb on + strand at 4717.513 kb on - strand at 4717.569 kb on + strand, within BWI76_RS22630 at 4717.715 kb on + strand, within BWI76_RS22630 at 4717.731 kb on + strand, within BWI76_RS22630 at 4717.805 kb on + strand, within BWI76_RS22630 at 4718.126 kb on - strand, within BWI76_RS22630 at 4718.250 kb on + strand, within BWI76_RS22630 at 4718.258 kb on - strand at 4718.269 kb on - strand at 4718.558 kb on + strand at 4718.763 kb on - strand, within BWI76_RS22635 at 4719.000 kb on + strand, within BWI76_RS22635 at 4719.391 kb on + strand, within BWI76_RS22635 at 4719.399 kb on - strand, within BWI76_RS22635 at 4719.458 kb on - strand, within BWI76_RS22635 at 4719.536 kb on + strand, within BWI76_RS22635 at 4719.652 kb on - strand at 4719.904 kb on + strand, within BWI76_RS22640 at 4719.917 kb on - strand, within BWI76_RS22640 at 4720.041 kb on - strand at 4720.112 kb on + strand at 4720.220 kb on + strand, within BWI76_RS22645 at 4720.220 kb on + strand, within BWI76_RS22645 at 4720.258 kb on + strand, within BWI76_RS22645 at 4720.279 kb on - strand, within BWI76_RS22645
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2 remove 4,717,503 + -0.6 4,717,513 - +1.4 4,717,569 + BWI76_RS22630 0.13 -0.2 4,717,715 + BWI76_RS22630 0.29 +0.2 4,717,731 + BWI76_RS22630 0.31 +2.4 4,717,805 + BWI76_RS22630 0.40 +1.4 4,718,126 - BWI76_RS22630 0.76 -0.9 4,718,250 + BWI76_RS22630 0.90 -0.9 4,718,258 - +0.5 4,718,269 - -0.9 4,718,558 + -0.8 4,718,763 - BWI76_RS22635 0.26 -0.8 4,719,000 + BWI76_RS22635 0.45 -1.4 4,719,391 + BWI76_RS22635 0.78 -1.2 4,719,399 - BWI76_RS22635 0.78 -0.1 4,719,458 - BWI76_RS22635 0.83 -1.4 4,719,536 + BWI76_RS22635 0.89 -1.6 4,719,652 - -1.1 4,719,904 + BWI76_RS22640 0.65 -0.3 4,719,917 - BWI76_RS22640 0.68 -0.3 4,720,041 - -0.2 4,720,112 + -1.1 4,720,220 + BWI76_RS22645 0.12 -1.7 4,720,220 + BWI76_RS22645 0.12 -1.9 4,720,258 + BWI76_RS22645 0.16 +1.9 4,720,279 - BWI76_RS22645 0.18 -1.0
Or see this region's nucleotide sequence