Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03660 and BWI76_RS03665 overlap by 4 nucleotides BWI76_RS03665 and BWI76_RS03670 are separated by 81 nucleotides
BWI76_RS03660: BWI76_RS03660 - hypothetical protein, at 754,892 to 756,757
_RS03660
BWI76_RS03665: BWI76_RS03665 - ABC transporter ATP-binding protein, at 756,754 to 758,490
_RS03665
BWI76_RS03670: BWI76_RS03670 - type I restriction-modification system subunit R, at 758,572 to 761,832
_RS03670
Position (kb) 756
757
758
759 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 756.027 kb on + strand, within BWI76_RS03660 at 756.084 kb on + strand, within BWI76_RS03660 at 756.159 kb on + strand, within BWI76_RS03660 at 756.299 kb on + strand, within BWI76_RS03660 at 756.337 kb on + strand, within BWI76_RS03660 at 756.337 kb on + strand, within BWI76_RS03660 at 756.863 kb on - strand at 757.161 kb on + strand, within BWI76_RS03665 at 757.992 kb on + strand, within BWI76_RS03665 at 758.052 kb on + strand at 758.170 kb on - strand at 758.237 kb on - strand, within BWI76_RS03665 at 758.307 kb on + strand, within BWI76_RS03665 at 758.320 kb on - strand at 758.351 kb on - strand at 758.407 kb on - strand at 758.525 kb on - strand at 758.587 kb on - strand at 758.587 kb on - strand at 758.587 kb on - strand at 758.600 kb on - strand at 758.606 kb on + strand at 758.610 kb on + strand at 758.610 kb on + strand at 758.621 kb on + strand at 758.621 kb on + strand at 758.621 kb on + strand at 758.621 kb on + strand at 758.621 kb on + strand at 758.621 kb on + strand at 758.623 kb on + strand at 758.629 kb on - strand at 758.629 kb on - strand at 758.629 kb on - strand at 758.629 kb on - strand at 758.629 kb on - strand at 758.629 kb on - strand at 758.629 kb on - strand at 758.629 kb on - strand at 758.629 kb on - strand at 758.629 kb on - strand at 758.629 kb on - strand at 758.629 kb on - strand at 758.629 kb on - strand at 758.631 kb on - strand at 758.631 kb on - strand at 758.653 kb on + strand at 758.653 kb on + strand at 758.661 kb on - strand at 758.680 kb on - strand at 758.680 kb on - strand at 758.681 kb on + strand at 758.682 kb on + strand at 758.687 kb on + strand at 758.690 kb on - strand at 758.690 kb on - strand at 758.706 kb on - strand at 758.707 kb on - strand at 758.722 kb on - strand at 758.722 kb on - strand at 758.722 kb on - strand at 758.722 kb on - strand at 758.732 kb on - strand at 758.733 kb on + strand at 758.733 kb on + strand at 758.742 kb on - strand at 758.743 kb on + strand at 758.749 kb on - strand at 758.751 kb on - strand at 758.756 kb on + strand at 758.756 kb on + strand at 758.756 kb on + strand at 758.756 kb on + strand at 758.756 kb on + strand at 758.756 kb on + strand at 758.764 kb on - strand at 758.764 kb on - strand at 758.764 kb on - strand at 758.793 kb on + strand at 758.793 kb on + strand at 758.801 kb on - strand at 758.922 kb on + strand, within BWI76_RS03670 at 758.951 kb on + strand, within BWI76_RS03670 at 758.951 kb on + strand, within BWI76_RS03670 at 758.951 kb on + strand, within BWI76_RS03670 at 758.951 kb on + strand, within BWI76_RS03670 at 758.951 kb on + strand, within BWI76_RS03670 at 758.951 kb on + strand, within BWI76_RS03670 at 758.951 kb on + strand, within BWI76_RS03670 at 758.951 kb on + strand, within BWI76_RS03670 at 758.951 kb on + strand, within BWI76_RS03670 at 758.951 kb on + strand, within BWI76_RS03670 at 758.951 kb on + strand, within BWI76_RS03670 at 758.951 kb on + strand, within BWI76_RS03670 at 758.951 kb on + strand, within BWI76_RS03670 at 758.959 kb on - strand, within BWI76_RS03670 at 758.959 kb on - strand, within BWI76_RS03670 at 758.959 kb on - strand, within BWI76_RS03670 at 758.959 kb on - strand, within BWI76_RS03670 at 758.959 kb on - strand, within BWI76_RS03670 at 758.959 kb on - strand, within BWI76_RS03670 at 758.959 kb on - strand, within BWI76_RS03670 at 758.959 kb on - strand, within BWI76_RS03670 at 758.959 kb on - strand, within BWI76_RS03670 at 758.959 kb on - strand, within BWI76_RS03670 at 758.959 kb on - strand, within BWI76_RS03670 at 758.959 kb on - strand, within BWI76_RS03670 at 758.959 kb on - strand, within BWI76_RS03670 at 758.959 kb on - strand, within BWI76_RS03670 at 758.961 kb on - strand, within BWI76_RS03670 at 758.961 kb on - strand, within BWI76_RS03670 at 758.969 kb on - strand, within BWI76_RS03670 at 759.018 kb on + strand, within BWI76_RS03670 at 759.018 kb on + strand, within BWI76_RS03670 at 759.019 kb on + strand, within BWI76_RS03670 at 759.025 kb on - strand, within BWI76_RS03670 at 759.026 kb on - strand, within BWI76_RS03670 at 759.026 kb on - strand, within BWI76_RS03670 at 759.026 kb on - strand, within BWI76_RS03670 at 759.027 kb on - strand, within BWI76_RS03670 at 759.034 kb on - strand, within BWI76_RS03670 at 759.034 kb on - strand, within BWI76_RS03670 at 759.036 kb on + strand, within BWI76_RS03670 at 759.052 kb on + strand, within BWI76_RS03670 at 759.055 kb on + strand, within BWI76_RS03670 at 759.066 kb on - strand, within BWI76_RS03670 at 759.108 kb on + strand, within BWI76_RS03670 at 759.115 kb on - strand, within BWI76_RS03670 at 759.131 kb on + strand, within BWI76_RS03670 at 759.141 kb on - strand, within BWI76_RS03670 at 759.192 kb on + strand, within BWI76_RS03670 at 759.241 kb on + strand, within BWI76_RS03670 at 759.242 kb on + strand, within BWI76_RS03670 at 759.242 kb on + strand, within BWI76_RS03670 at 759.242 kb on + strand, within BWI76_RS03670 at 759.242 kb on + strand, within BWI76_RS03670 at 759.242 kb on + strand, within BWI76_RS03670 at 759.250 kb on - strand, within BWI76_RS03670 at 759.250 kb on - strand, within BWI76_RS03670 at 759.266 kb on - strand, within BWI76_RS03670 at 759.282 kb on + strand at 759.282 kb on + strand, within BWI76_RS03670 at 759.285 kb on - strand, within BWI76_RS03670 at 759.290 kb on - strand, within BWI76_RS03670 at 759.291 kb on + strand, within BWI76_RS03670 at 759.299 kb on - strand, within BWI76_RS03670 at 759.299 kb on - strand, within BWI76_RS03670 at 759.335 kb on + strand, within BWI76_RS03670 at 759.335 kb on + strand, within BWI76_RS03670 at 759.343 kb on - strand, within BWI76_RS03670 at 759.343 kb on - strand, within BWI76_RS03670 at 759.359 kb on + strand, within BWI76_RS03670 at 759.359 kb on + strand, within BWI76_RS03670 at 759.359 kb on + strand, within BWI76_RS03670 at 759.375 kb on - strand, within BWI76_RS03670 at 759.458 kb on - strand, within BWI76_RS03670
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2 remove 756,027 + BWI76_RS03660 0.61 +0.3 756,084 + BWI76_RS03660 0.64 +1.9 756,159 + BWI76_RS03660 0.68 +1.8 756,299 + BWI76_RS03660 0.75 -0.6 756,337 + BWI76_RS03660 0.77 +5.8 756,337 + BWI76_RS03660 0.77 +1.1 756,863 - -1.3 757,161 + BWI76_RS03665 0.23 +0.4 757,992 + BWI76_RS03665 0.71 -0.5 758,052 + +0.4 758,170 - +0.4 758,237 - BWI76_RS03665 0.85 -1.3 758,307 + BWI76_RS03665 0.89 +0.1 758,320 - -0.9 758,351 - +0.2 758,407 - -1.2 758,525 - -0.7 758,587 - -0.1 758,587 - +0.3 758,587 - +1.5 758,600 - -0.2 758,606 + -1.0 758,610 + +0.5 758,610 + -0.5 758,621 + -0.4 758,621 + +0.4 758,621 + -0.6 758,621 + -1.5 758,621 + -1.9 758,621 + -1.1 758,623 + -0.3 758,629 - +0.4 758,629 - -2.6 758,629 - +0.7 758,629 - -0.5 758,629 - +2.3 758,629 - -0.9 758,629 - -1.3 758,629 - -0.6 758,629 - -0.4 758,629 - +0.5 758,629 - -0.3 758,629 - +1.2 758,629 - +0.8 758,631 - -1.4 758,631 - -2.4 758,653 + +0.1 758,653 + +0.7 758,661 - +0.4 758,680 - -1.0 758,680 - -0.6 758,681 + -2.2 758,682 + +1.9 758,687 + -1.0 758,690 - -0.3 758,690 - -1.9 758,706 - +1.5 758,707 - +0.8 758,722 - -0.7 758,722 - +0.3 758,722 - -0.1 758,722 - -1.5 758,732 - -0.9 758,733 + +0.6 758,733 + -0.6 758,742 - +0.3 758,743 + -0.4 758,749 - +1.2 758,751 - +0.4 758,756 + -1.0 758,756 + -1.0 758,756 + -1.1 758,756 + -0.8 758,756 + +0.9 758,756 + -0.1 758,764 - -0.6 758,764 - +0.5 758,764 - -2.1 758,793 + +0.4 758,793 + -0.5 758,801 - -1.2 758,922 + BWI76_RS03670 0.11 +1.2 758,951 + BWI76_RS03670 0.12 -0.1 758,951 + BWI76_RS03670 0.12 +1.6 758,951 + BWI76_RS03670 0.12 -1.4 758,951 + BWI76_RS03670 0.12 +1.9 758,951 + BWI76_RS03670 0.12 -0.1 758,951 + BWI76_RS03670 0.12 -1.3 758,951 + BWI76_RS03670 0.12 +0.8 758,951 + BWI76_RS03670 0.12 -0.9 758,951 + BWI76_RS03670 0.12 +0.2 758,951 + BWI76_RS03670 0.12 +0.5 758,951 + BWI76_RS03670 0.12 -0.6 758,951 + BWI76_RS03670 0.12 -0.5 758,951 + BWI76_RS03670 0.12 -1.9 758,959 - BWI76_RS03670 0.12 -1.4 758,959 - BWI76_RS03670 0.12 -1.4 758,959 - BWI76_RS03670 0.12 -0.1 758,959 - BWI76_RS03670 0.12 -1.5 758,959 - BWI76_RS03670 0.12 +1.2 758,959 - BWI76_RS03670 0.12 -0.5 758,959 - BWI76_RS03670 0.12 -0.2 758,959 - BWI76_RS03670 0.12 +0.1 758,959 - BWI76_RS03670 0.12 +0.2 758,959 - BWI76_RS03670 0.12 +2.9 758,959 - BWI76_RS03670 0.12 +0.9 758,959 - BWI76_RS03670 0.12 -1.5 758,959 - BWI76_RS03670 0.12 -1.0 758,959 - BWI76_RS03670 0.12 +1.9 758,961 - BWI76_RS03670 0.12 +0.8 758,961 - BWI76_RS03670 0.12 -0.9 758,969 - BWI76_RS03670 0.12 -0.5 759,018 + BWI76_RS03670 0.14 -0.6 759,018 + BWI76_RS03670 0.14 +1.0 759,019 + BWI76_RS03670 0.14 -0.6 759,025 - BWI76_RS03670 0.14 -1.3 759,026 - BWI76_RS03670 0.14 -0.1 759,026 - BWI76_RS03670 0.14 +2.2 759,026 - BWI76_RS03670 0.14 -0.8 759,027 - BWI76_RS03670 0.14 -1.6 759,034 - BWI76_RS03670 0.14 +0.0 759,034 - BWI76_RS03670 0.14 +0.6 759,036 + BWI76_RS03670 0.14 -2.1 759,052 + BWI76_RS03670 0.15 +0.8 759,055 + BWI76_RS03670 0.15 +0.9 759,066 - BWI76_RS03670 0.15 +0.9 759,108 + BWI76_RS03670 0.16 -0.9 759,115 - BWI76_RS03670 0.17 -1.6 759,131 + BWI76_RS03670 0.17 +0.8 759,141 - BWI76_RS03670 0.17 -1.1 759,192 + BWI76_RS03670 0.19 -0.8 759,241 + BWI76_RS03670 0.21 -0.0 759,242 + BWI76_RS03670 0.21 +0.2 759,242 + BWI76_RS03670 0.21 -1.1 759,242 + BWI76_RS03670 0.21 -0.6 759,242 + BWI76_RS03670 0.21 +1.7 759,242 + BWI76_RS03670 0.21 +0.1 759,250 - BWI76_RS03670 0.21 -2.4 759,250 - BWI76_RS03670 0.21 -0.5 759,266 - BWI76_RS03670 0.21 +0.5 759,282 + -0.6 759,282 + BWI76_RS03670 0.22 -1.5 759,285 - BWI76_RS03670 0.22 +0.5 759,290 - BWI76_RS03670 0.22 -0.6 759,291 + BWI76_RS03670 0.22 +1.9 759,299 - BWI76_RS03670 0.22 -0.1 759,299 - BWI76_RS03670 0.22 +0.1 759,335 + BWI76_RS03670 0.23 +2.0 759,335 + BWI76_RS03670 0.23 -0.7 759,343 - BWI76_RS03670 0.24 +0.6 759,343 - BWI76_RS03670 0.24 -1.2 759,359 + BWI76_RS03670 0.24 -3.1 759,359 + BWI76_RS03670 0.24 +0.2 759,359 + BWI76_RS03670 0.24 -0.1 759,375 - BWI76_RS03670 0.25 -0.2 759,458 - BWI76_RS03670 0.27 -2.0
Or see this region's nucleotide sequence