Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03630 and BWI76_RS03635 overlap by 7 nucleotides BWI76_RS03635 and BWI76_RS03640 are separated by 158 nucleotides BWI76_RS03640 and BWI76_RS03645 overlap by 4 nucleotides
BWI76_RS03630: BWI76_RS03630 - LysR family transcriptional regulator, at 750,179 to 751,087
_RS03630
BWI76_RS03635: BWI76_RS03635 - FosA family fosfomycin resistance glutathione transferase, at 751,081 to 751,524
_RS03635
BWI76_RS03640: BWI76_RS03640 - amino acid permease-associated protein, at 751,683 to 753,026
_RS03640
BWI76_RS03645: BWI76_RS03645 - hypothetical protein, at 753,023 to 753,934
_RS03645
Position (kb) 751
752
753
754 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 750.734 kb on + strand, within BWI76_RS03630 at 750.734 kb on + strand, within BWI76_RS03630 at 750.751 kb on + strand, within BWI76_RS03630 at 750.880 kb on + strand, within BWI76_RS03630 at 750.948 kb on + strand, within BWI76_RS03630 at 751.005 kb on + strand at 751.646 kb on - strand at 751.769 kb on + strand at 751.861 kb on - strand, within BWI76_RS03640 at 751.946 kb on - strand, within BWI76_RS03640 at 751.990 kb on - strand, within BWI76_RS03640 at 752.242 kb on + strand, within BWI76_RS03640 at 752.243 kb on - strand, within BWI76_RS03640 at 752.243 kb on - strand, within BWI76_RS03640 at 752.366 kb on - strand, within BWI76_RS03640 at 752.412 kb on - strand, within BWI76_RS03640 at 752.460 kb on - strand, within BWI76_RS03640 at 752.582 kb on + strand, within BWI76_RS03640 at 752.590 kb on - strand, within BWI76_RS03640 at 752.597 kb on + strand, within BWI76_RS03640 at 752.626 kb on - strand, within BWI76_RS03640 at 752.697 kb on - strand, within BWI76_RS03640 at 752.697 kb on - strand, within BWI76_RS03640 at 752.782 kb on - strand, within BWI76_RS03640 at 752.789 kb on - strand, within BWI76_RS03640 at 752.961 kb on - strand at 753.069 kb on + strand at 753.077 kb on - strand at 753.140 kb on + strand, within BWI76_RS03645 at 753.148 kb on - strand, within BWI76_RS03645 at 753.580 kb on + strand, within BWI76_RS03645 at 753.673 kb on - strand, within BWI76_RS03645 at 753.684 kb on - strand, within BWI76_RS03645 at 753.730 kb on + strand, within BWI76_RS03645 at 753.744 kb on + strand, within BWI76_RS03645 at 753.773 kb on - strand, within BWI76_RS03645 at 753.774 kb on - strand, within BWI76_RS03645 at 753.848 kb on - strand at 753.848 kb on - strand at 753.858 kb on - strand at 753.858 kb on - strand at 753.866 kb on - strand at 753.874 kb on - strand at 753.874 kb on - strand at 753.874 kb on - strand at 753.885 kb on + strand at 753.887 kb on - strand at 753.887 kb on - strand at 753.887 kb on - strand at 753.888 kb on - strand at 753.891 kb on + strand at 753.893 kb on - strand at 753.902 kb on + strand at 753.903 kb on + strand at 753.903 kb on + strand at 753.903 kb on + strand at 753.903 kb on + strand at 753.903 kb on + strand at 753.903 kb on + strand at 753.910 kb on - strand at 753.910 kb on - strand at 753.910 kb on - strand at 753.910 kb on - strand at 753.911 kb on - strand at 753.911 kb on - strand at 753.911 kb on - strand at 753.911 kb on - strand at 753.911 kb on - strand at 753.911 kb on - strand at 753.911 kb on - strand at 753.911 kb on - strand at 753.911 kb on - strand at 753.937 kb on + strand at 753.954 kb on - strand at 753.956 kb on - strand at 753.987 kb on + strand at 754.018 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2 remove 750,734 + BWI76_RS03630 0.61 -0.8 750,734 + BWI76_RS03630 0.61 -1.3 750,751 + BWI76_RS03630 0.63 -2.0 750,880 + BWI76_RS03630 0.77 +0.6 750,948 + BWI76_RS03630 0.85 -0.0 751,005 + +0.0 751,646 - -1.2 751,769 + +0.2 751,861 - BWI76_RS03640 0.13 +0.3 751,946 - BWI76_RS03640 0.20 -0.4 751,990 - BWI76_RS03640 0.23 +2.1 752,242 + BWI76_RS03640 0.42 +0.1 752,243 - BWI76_RS03640 0.42 -1.3 752,243 - BWI76_RS03640 0.42 +0.2 752,366 - BWI76_RS03640 0.51 -1.0 752,412 - BWI76_RS03640 0.54 -0.9 752,460 - BWI76_RS03640 0.58 -0.9 752,582 + BWI76_RS03640 0.67 -0.1 752,590 - BWI76_RS03640 0.67 +2.5 752,597 + BWI76_RS03640 0.68 -1.1 752,626 - BWI76_RS03640 0.70 -1.5 752,697 - BWI76_RS03640 0.75 +0.1 752,697 - BWI76_RS03640 0.75 -1.9 752,782 - BWI76_RS03640 0.82 +0.3 752,789 - BWI76_RS03640 0.82 -1.2 752,961 - -0.7 753,069 + +0.5 753,077 - +1.1 753,140 + BWI76_RS03645 0.13 +0.1 753,148 - BWI76_RS03645 0.14 -1.3 753,580 + BWI76_RS03645 0.61 -0.5 753,673 - BWI76_RS03645 0.71 -0.4 753,684 - BWI76_RS03645 0.72 -0.1 753,730 + BWI76_RS03645 0.78 +0.2 753,744 + BWI76_RS03645 0.79 -0.9 753,773 - BWI76_RS03645 0.82 +1.1 753,774 - BWI76_RS03645 0.82 +2.2 753,848 - +0.6 753,848 - -0.3 753,858 - -0.6 753,858 - +1.1 753,866 - +0.0 753,874 - +4.2 753,874 - +0.2 753,874 - +0.6 753,885 + +0.4 753,887 - -0.4 753,887 - +1.3 753,887 - -0.7 753,888 - +0.6 753,891 + -0.3 753,893 - +3.1 753,902 + +0.6 753,903 + -1.0 753,903 + +0.1 753,903 + -0.6 753,903 + +0.2 753,903 + +0.4 753,903 + -0.1 753,910 - +0.4 753,910 - -0.6 753,910 - -0.2 753,910 - -0.8 753,911 - +0.6 753,911 - -0.2 753,911 - +0.5 753,911 - +0.4 753,911 - -0.7 753,911 - +2.2 753,911 - +0.4 753,911 - -0.3 753,911 - -1.3 753,937 + +0.1 753,954 - -0.2 753,956 - +1.3 753,987 + -1.8 754,018 - +0.8
Or see this region's nucleotide sequence