Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27785 and BWI76_RS27790 are separated by 145 nucleotides BWI76_RS27790 and BWI76_RS27795 are separated by 9 nucleotides
BWI76_RS27785: BWI76_RS27785 - hexose-6-phosphate transporter; deoxyribose-5-phosphate or dAMP transporter (from data) , at 5,764,161 to 5,765,552
_RS27785
BWI76_RS27790: BWI76_RS27790 - MFS transporter family glucose-6-phosphate receptor UhpC, at 5,765,698 to 5,767,017
_RS27790
BWI76_RS27795: BWI76_RS27795 - two-component system sensor histidine kinase UhpB, at 5,767,027 to 5,768,529
_RS27795
Position (kb)
5765
5766
5767
5768 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5764.710 kb on + strand, within BWI76_RS27785 at 5764.845 kb on - strand, within BWI76_RS27785 at 5765.013 kb on - strand, within BWI76_RS27785 at 5765.077 kb on + strand, within BWI76_RS27785 at 5765.129 kb on + strand, within BWI76_RS27785 at 5765.129 kb on + strand, within BWI76_RS27785 at 5765.161 kb on + strand, within BWI76_RS27785 at 5765.188 kb on - strand, within BWI76_RS27785 at 5765.257 kb on + strand, within BWI76_RS27785 at 5765.257 kb on + strand, within BWI76_RS27785 at 5765.262 kb on + strand, within BWI76_RS27785 at 5765.315 kb on + strand, within BWI76_RS27785 at 5765.315 kb on + strand, within BWI76_RS27785 at 5765.323 kb on - strand at 5765.401 kb on + strand, within BWI76_RS27785 at 5765.455 kb on + strand at 5765.463 kb on - strand at 5765.510 kb on + strand at 5765.516 kb on + strand at 5765.516 kb on + strand at 5765.518 kb on - strand at 5765.519 kb on - strand at 5765.519 kb on - strand at 5765.542 kb on - strand at 5765.542 kb on - strand at 5765.563 kb on + strand at 5765.563 kb on + strand at 5765.571 kb on - strand at 5765.573 kb on + strand at 5765.697 kb on + strand at 5766.187 kb on - strand, within BWI76_RS27790 at 5766.227 kb on + strand, within BWI76_RS27790 at 5766.227 kb on + strand, within BWI76_RS27790 at 5766.235 kb on - strand, within BWI76_RS27790 at 5766.237 kb on - strand, within BWI76_RS27790 at 5766.307 kb on + strand, within BWI76_RS27790 at 5766.307 kb on + strand, within BWI76_RS27790 at 5766.308 kb on - strand, within BWI76_RS27790 at 5766.462 kb on - strand, within BWI76_RS27790 at 5766.536 kb on + strand, within BWI76_RS27790 at 5766.544 kb on - strand, within BWI76_RS27790 at 5766.546 kb on + strand, within BWI76_RS27790 at 5766.640 kb on - strand, within BWI76_RS27790 at 5766.641 kb on + strand, within BWI76_RS27790 at 5766.649 kb on - strand, within BWI76_RS27790 at 5766.687 kb on + strand, within BWI76_RS27790 at 5766.780 kb on + strand, within BWI76_RS27790 at 5766.788 kb on - strand, within BWI76_RS27790 at 5766.788 kb on - strand, within BWI76_RS27790 at 5766.791 kb on + strand, within BWI76_RS27790 at 5766.791 kb on + strand, within BWI76_RS27790 at 5766.799 kb on - strand, within BWI76_RS27790 at 5766.837 kb on - strand, within BWI76_RS27790 at 5766.897 kb on + strand at 5767.081 kb on - strand at 5767.089 kb on + strand at 5767.131 kb on + strand at 5767.131 kb on + strand at 5767.139 kb on - strand at 5767.155 kb on - strand at 5767.224 kb on - strand, within BWI76_RS27795 at 5767.232 kb on + strand, within BWI76_RS27795 at 5767.264 kb on - strand, within BWI76_RS27795 at 5767.280 kb on + strand at 5767.298 kb on - strand, within BWI76_RS27795 at 5767.415 kb on - strand, within BWI76_RS27795 at 5767.596 kb on + strand, within BWI76_RS27795 at 5767.634 kb on - strand, within BWI76_RS27795 at 5767.697 kb on - strand, within BWI76_RS27795 at 5767.814 kb on + strand, within BWI76_RS27795 at 5767.856 kb on + strand, within BWI76_RS27795 at 5767.861 kb on + strand, within BWI76_RS27795 at 5767.943 kb on - strand, within BWI76_RS27795 at 5767.949 kb on - strand, within BWI76_RS27795
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 5,764,710 + BWI76_RS27785 0.39 -1.6 5,764,845 - BWI76_RS27785 0.49 -0.2 5,765,013 - BWI76_RS27785 0.61 +1.4 5,765,077 + BWI76_RS27785 0.66 +0.2 5,765,129 + BWI76_RS27785 0.70 -0.4 5,765,129 + BWI76_RS27785 0.70 +0.8 5,765,161 + BWI76_RS27785 0.72 -0.8 5,765,188 - BWI76_RS27785 0.74 -1.3 5,765,257 + BWI76_RS27785 0.79 +0.3 5,765,257 + BWI76_RS27785 0.79 -0.2 5,765,262 + BWI76_RS27785 0.79 -0.5 5,765,315 + BWI76_RS27785 0.83 -1.0 5,765,315 + BWI76_RS27785 0.83 -0.4 5,765,323 - -0.9 5,765,401 + BWI76_RS27785 0.89 -0.9 5,765,455 + +1.7 5,765,463 - -0.3 5,765,510 + +0.3 5,765,516 + -0.5 5,765,516 + -0.6 5,765,518 - -0.2 5,765,519 - +1.5 5,765,519 - -0.3 5,765,542 - +0.5 5,765,542 - +0.7 5,765,563 + +0.7 5,765,563 + +1.6 5,765,571 - -1.4 5,765,573 + -0.4 5,765,697 + -0.8 5,766,187 - BWI76_RS27790 0.37 +0.7 5,766,227 + BWI76_RS27790 0.40 +0.6 5,766,227 + BWI76_RS27790 0.40 -0.3 5,766,235 - BWI76_RS27790 0.41 +0.3 5,766,237 - BWI76_RS27790 0.41 +1.0 5,766,307 + BWI76_RS27790 0.46 -0.1 5,766,307 + BWI76_RS27790 0.46 +0.6 5,766,308 - BWI76_RS27790 0.46 +0.7 5,766,462 - BWI76_RS27790 0.58 +1.2 5,766,536 + BWI76_RS27790 0.63 +0.1 5,766,544 - BWI76_RS27790 0.64 +1.2 5,766,546 + BWI76_RS27790 0.64 -0.2 5,766,640 - BWI76_RS27790 0.71 -0.6 5,766,641 + BWI76_RS27790 0.71 -1.6 5,766,649 - BWI76_RS27790 0.72 +0.4 5,766,687 + BWI76_RS27790 0.75 +1.7 5,766,780 + BWI76_RS27790 0.82 +1.9 5,766,788 - BWI76_RS27790 0.83 +1.4 5,766,788 - BWI76_RS27790 0.83 -0.7 5,766,791 + BWI76_RS27790 0.83 +0.9 5,766,791 + BWI76_RS27790 0.83 -0.5 5,766,799 - BWI76_RS27790 0.83 +0.0 5,766,837 - BWI76_RS27790 0.86 +1.1 5,766,897 + -1.2 5,767,081 - -0.8 5,767,089 + +1.3 5,767,131 + +1.0 5,767,131 + -1.9 5,767,139 - +0.4 5,767,155 - +1.0 5,767,224 - BWI76_RS27795 0.13 -0.1 5,767,232 + BWI76_RS27795 0.14 +0.2 5,767,264 - BWI76_RS27795 0.16 -2.0 5,767,280 + +1.4 5,767,298 - BWI76_RS27795 0.18 -2.1 5,767,415 - BWI76_RS27795 0.26 -3.3 5,767,596 + BWI76_RS27795 0.38 -0.2 5,767,634 - BWI76_RS27795 0.40 +0.5 5,767,697 - BWI76_RS27795 0.45 +0.3 5,767,814 + BWI76_RS27795 0.52 -0.3 5,767,856 + BWI76_RS27795 0.55 +0.3 5,767,861 + BWI76_RS27795 0.55 +0.6 5,767,943 - BWI76_RS27795 0.61 -1.9 5,767,949 - BWI76_RS27795 0.61 -1.6
Or see this region's nucleotide sequence