Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27375 and BWI76_RS27380 are separated by 174 nucleotides BWI76_RS27380 and BWI76_RS27385 are separated by 124 nucleotides BWI76_RS27385 and BWI76_RS27390 are separated by 65 nucleotides BWI76_RS27390 and BWI76_RS27395 are separated by 123 nucleotides
BWI76_RS27375: BWI76_RS27375 - deoxyuridine 5'-triphosphate nucleotidohydrolase, at 5,681,045 to 5,681,503
_RS27375
BWI76_RS27380: BWI76_RS27380 - nucleoid occlusion factor SlmA, at 5,681,678 to 5,682,274
_RS27380
BWI76_RS27385: BWI76_RS27385 - orotate phosphoribosyltransferase, at 5,682,399 to 5,683,040
_RS27385
BWI76_RS27390: BWI76_RS27390 - ribonuclease PH, at 5,683,106 to 5,683,822
_RS27390
BWI76_RS27395: BWI76_RS27395 - hypothetical protein, at 5,683,946 to 5,684,809
_RS27395
Position (kb)
5682
5683
5684 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 5681.619 kb on - strand at 5681.767 kb on + strand, within BWI76_RS27380 at 5681.770 kb on + strand, within BWI76_RS27380 at 5682.119 kb on + strand, within BWI76_RS27380 at 5682.161 kb on + strand, within BWI76_RS27380 at 5682.193 kb on - strand, within BWI76_RS27380 at 5682.350 kb on + strand at 5682.357 kb on + strand at 5682.423 kb on + strand at 5682.695 kb on - strand, within BWI76_RS27385 at 5682.695 kb on - strand, within BWI76_RS27385 at 5682.916 kb on + strand, within BWI76_RS27385 at 5682.916 kb on + strand, within BWI76_RS27385 at 5682.916 kb on + strand, within BWI76_RS27385 at 5682.916 kb on + strand, within BWI76_RS27385 at 5682.916 kb on + strand, within BWI76_RS27385 at 5682.916 kb on + strand, within BWI76_RS27385 at 5682.916 kb on + strand, within BWI76_RS27385 at 5682.924 kb on - strand, within BWI76_RS27385 at 5682.924 kb on - strand, within BWI76_RS27385 at 5682.924 kb on - strand, within BWI76_RS27385 at 5683.011 kb on + strand at 5683.056 kb on - strand at 5683.142 kb on + strand at 5683.155 kb on + strand at 5683.194 kb on - strand, within BWI76_RS27390 at 5683.328 kb on + strand, within BWI76_RS27390 at 5683.468 kb on + strand, within BWI76_RS27390 at 5683.607 kb on + strand, within BWI76_RS27390 at 5683.652 kb on + strand, within BWI76_RS27390 at 5683.655 kb on - strand, within BWI76_RS27390 at 5683.719 kb on - strand, within BWI76_RS27390 at 5683.738 kb on + strand, within BWI76_RS27390 at 5683.772 kb on + strand at 5683.772 kb on + strand at 5683.780 kb on - strand at 5683.780 kb on - strand at 5683.798 kb on - strand at 5683.905 kb on + strand at 5683.913 kb on - strand at 5683.941 kb on + strand at 5683.941 kb on + strand at 5684.004 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 5,681,619 - -1.1 5,681,767 + BWI76_RS27380 0.15 -0.4 5,681,770 + BWI76_RS27380 0.15 -0.5 5,682,119 + BWI76_RS27380 0.74 -0.5 5,682,161 + BWI76_RS27380 0.81 -0.3 5,682,193 - BWI76_RS27380 0.86 -0.1 5,682,350 + -0.3 5,682,357 + +0.1 5,682,423 + +0.1 5,682,695 - BWI76_RS27385 0.46 -2.1 5,682,695 - BWI76_RS27385 0.46 -1.3 5,682,916 + BWI76_RS27385 0.81 +1.0 5,682,916 + BWI76_RS27385 0.81 -1.6 5,682,916 + BWI76_RS27385 0.81 -3.3 5,682,916 + BWI76_RS27385 0.81 -1.4 5,682,916 + BWI76_RS27385 0.81 -2.1 5,682,916 + BWI76_RS27385 0.81 -2.4 5,682,916 + BWI76_RS27385 0.81 -2.1 5,682,924 - BWI76_RS27385 0.82 -3.9 5,682,924 - BWI76_RS27385 0.82 -2.1 5,682,924 - BWI76_RS27385 0.82 +0.4 5,683,011 + -3.7 5,683,056 - +0.1 5,683,142 + -1.2 5,683,155 + -1.7 5,683,194 - BWI76_RS27390 0.12 -0.2 5,683,328 + BWI76_RS27390 0.31 -0.8 5,683,468 + BWI76_RS27390 0.50 -1.5 5,683,607 + BWI76_RS27390 0.70 -1.3 5,683,652 + BWI76_RS27390 0.76 -0.5 5,683,655 - BWI76_RS27390 0.77 -1.9 5,683,719 - BWI76_RS27390 0.85 -0.6 5,683,738 + BWI76_RS27390 0.88 -1.8 5,683,772 + -1.0 5,683,772 + -1.9 5,683,780 - +0.4 5,683,780 - +0.6 5,683,798 - -2.1 5,683,905 + +0.3 5,683,913 - -1.7 5,683,941 + -2.1 5,683,941 + -1.3 5,684,004 - -1.3
Or see this region's nucleotide sequence